View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_31 (Length: 369)
Name: NF2125_low_31
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 24982550 - 24982201
Alignment:
| Q |
16 |
aacacatacaaatccttaggttccctcaataat-----taccaatcctagaatcaaacatccaaaccctaaattccaaacttaaacacagtctaggactg |
110 |
Q |
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| T |
24982550 |
aacacgtacaaatccttaggttccctcaataatatacgtaccaatcctagaatcaaacatccaaaccctaaattccaaacttaaacacagtctagggctg |
24982451 |
T |
|
| Q |
111 |
ttcaaattatacaatctgaaaagttatagaaagtttcatattatataatttcaatcctccaaaattgtgtggacggtggtgttaattacaccgaaggttt |
210 |
Q |
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| T |
24982450 |
ttaaaattatacaattcgaaaagttatagaaagtttcagattatataatttaaaccctccaagattgtgtggacggtggtgttaattacaccgaaggttt |
24982351 |
T |
|
| Q |
211 |
agacgctttgtggcatgtttaatgtatttttggtcagtttatgcatcataaacattttcatttgagtgaagttaaaatctagaatatgtttatgactata |
310 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||| || |||||||||||||||||| |
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| T |
24982350 |
agacgctttgtgacatgtttaatgtatttttggtcagtttatgcatcgtaaacattttcatttgactgaagttacaatttaaaatatgtttatgactata |
24982251 |
T |
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| Q |
311 |
aatagtcctacctgcttcaacatatatata--cattcattcattcttcat |
358 |
Q |
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| T |
24982250 |
aatagtcctacctgcttcaacatatatatattcattcattcattcttcat |
24982201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 24982603 - 24982550
Alignment:
| Q |
16 |
aacacatacaaatccttaggttccctcaataattaccaatcctagaatcaaaca |
69 |
Q |
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| T |
24982603 |
aacacgtacaaatccttaggttccctcaataattaccaatcctagaatcaaaca |
24982550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 339
Target Start/End: Original strand, 16741786 - 16741827
Alignment:
| Q |
298 |
gtttatgactataaatagtcctacctgcttcaacatatatat |
339 |
Q |
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| T |
16741786 |
gtttatgactataaatagtcttacatgcttcaacatatatat |
16741827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 1655987 - 1656093
Alignment:
| Q |
204 |
aaggtttagacgctttgtggcatgtttaatgtatttttggtcagtttatgcatcataaacattttcatttgagtgaagttaaaatctagaatatgtttat |
303 |
Q |
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| T |
1655987 |
aaggtttagacgatttgtggtgtgtttaatgaatttatggttggtttatgcattttaaacattttc-tttgattatagttacaatccaggataggtttat |
1656085 |
T |
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| Q |
304 |
gactataa |
311 |
Q |
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| T |
1656086 |
ggctataa |
1656093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 335
Target Start/End: Original strand, 7631757 - 7631886
Alignment:
| Q |
204 |
aaggtttagacgctttgtggcatgtttaatgtatttttggtcagtttatgcatcataaacattttcatttgagtgaagttaaaatctagaatatgtttat |
303 |
Q |
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|||||||| ||| ||||||| |||||||| | ||||||||| |||||||| | ||||| ||| | ||||| | ||||| ||||||| ||| ||||| |
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| T |
7631757 |
aaggtttaaacggtttgtggt-tgtttaatatttttttggtcggtttatgcgttgtaaacgtttcc-tttgaatatagttacaatctaggatagatttat |
7631854 |
T |
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| Q |
304 |
gactataaatagtcctacctgcttcaacatat |
335 |
Q |
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|||||||||||||| | | ||||||||||||| |
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| T |
7631855 |
gactataaatagtcttgcatgcttcaacatat |
7631886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 56579214 - 56579169
Alignment:
| Q |
87 |
aaacttaaacacagtctaggactgttcaaattatacaatctgaaaa |
132 |
Q |
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| T |
56579214 |
aaacttaaacacagtctgggacggttcggattatacaatctgaaaa |
56579169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 317
Target Start/End: Original strand, 16490106 - 16490227
Alignment:
| Q |
195 |
attacaccgaaggtttagacgctttgtggcatgtttaatgtatttttggtcagtttatgcatcataaacattttcatttgagtgaagttaaaatctagaa |
294 |
Q |
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|||||||| ||||||| |||| ||||||| |||||||||||||||||||| ||||| ||||| ||||| | || ||||| || ||||| | ||||| | |
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| T |
16490106 |
attacaccaaaggttttgacggtttgtggtgtgtttaatgtatttttggtcggtttaggcatcgtaaac-gtatcctttgaatgtagttacagtctagga |
16490204 |
T |
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| Q |
295 |
tatgtttatgactataaatagtc |
317 |
Q |
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|| |||||| |||||||||||| |
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| T |
16490205 |
taattttatggctataaatagtc |
16490227 |
T |
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