View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_33 (Length: 367)
Name: NF2125_low_33
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 14 - 350
Target Start/End: Complemental strand, 32138447 - 32138111
Alignment:
| Q |
14 |
agattagtacggttgatccttacacggttttagaagcttctatttacaaagcagttacagacactttcgtgaaagcgtctgctgcaagaaacataaagag |
113 |
Q |
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| T |
32138447 |
agattagtacggttgatccttacacggttttagaagcttctatttacaaagcagttacagacgctttcgtgaaagcgtctgctgcaagaaacataaagag |
32138348 |
T |
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| Q |
114 |
ggtgggttcggttgcgccttttgaattttgttacactaatttgactgggacacgattgggtgcagctgtgcctactattgagctctttttgcaaaatgaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32138347 |
ggtgggttcggttgcgccttttgaattttgttacactaatttgactgggacacgattgggtgcagctgtgcctactattgagctctttttgcaaaatgaa |
32138248 |
T |
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| Q |
214 |
aatgtggtttggaggatatttggtgcaaattcaatggtgagtataaatgatgaagttttgtgtcttggatttgtgaatggtggtaagaatacaaggactt |
313 |
Q |
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| T |
32138247 |
aatgtggtttggaggatatttggtgcaaattcaatggtgagtataaatgatgaagttttgtgtcttggatttgtgaatggtggtaagaatacaaggactt |
32138148 |
T |
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| Q |
314 |
caattgtgattggagggtatcagttggagaataatct |
350 |
Q |
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| T |
32138147 |
caattgtgattggagggtatcagttggagaataatct |
32138111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 350
Target Start/End: Complemental strand, 32147837 - 32147504
Alignment:
| Q |
14 |
agattagtacggttgatccttacacggttttagaagcttctatttacaaagcagttacagacactttcgtgaaagcgtctgctgcaagaaacataaagag |
113 |
Q |
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|||| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
32147837 |
agataagtaccgttgatccttacacagttttggaagcttctatttacaaagcagttacagacgctttcgtgaaagcgtctgctgcaagaaacataaaaag |
32147738 |
T |
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| Q |
114 |
ggtgggttcggttgcgccttttgaattttgttacactaatttgactgggacacgattgggtgcagctgtgcctactattgagctctttttgcaaaatgaa |
213 |
Q |
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| T |
32147737 |
ggtggattcggttgcaccttttgagttttgttacactaatgtgactgggacacgattgggtgcggatgtacctactattgagctttatttgcaga---ac |
32147641 |
T |
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| Q |
214 |
aatgtggtttggaggatatttggtgcaaattcaatggtgagtataaatgatgaagttttgtgtcttggatttgtgaatggtggtaagaatacaaggactt |
313 |
Q |
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| T |
32147640 |
aatgtgatttggaggatatttggtgcaaattcaatggtgaatataaatgatgaggttttgtgtcttggttttgtgattggtggtgagaatacatgggctt |
32147541 |
T |
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| Q |
314 |
caattgtgattggagggtatcagttggagaataatct |
350 |
Q |
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| T |
32147540 |
caattgtgattggagggtatcagttggagaataatct |
32147504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 14 - 350
Target Start/End: Complemental strand, 32126646 - 32126307
Alignment:
| Q |
14 |
agattagtacggttgatccttacacggttttagaagcttctatttacaaagcagttacagacactttcgtgaaagcgtctgctgcaagaaacataaagag |
113 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| |||| |||||||||||||| | |
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| T |
32126646 |
agattagtacggttgatccttacacggttctagaagcttctatttacaaagcagttacagacgcttttgtgaaagcatctgttgcaagaaacataacaac |
32126547 |
T |
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| Q |
114 |
ggtgggttcggttgcgccttttgaattttgttacact------aatttgactgggacacgattgggtgcagctgtgcctactattgagctctttttgcaa |
207 |
Q |
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| T |
32126546 |
agaggattcatctccgccttttgaattttgttatagttttgacaatttgccagggacgccattgggtgcgtctgtgcctacaattgagcttcttttacag |
32126447 |
T |
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| Q |
208 |
aatgaaaatgtggtttggaggatatttggtgcaaattcaatggtgagtataaatgatgaagttttgtgtcttggatttgtgaatggtggtaagaatacaa |
307 |
Q |
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| T |
32126446 |
aac---aatgtgatttggagcatgtttggtgcaaattcgatggtgaatataaatgatgaggttttgtgtcttggatttgttaacggtggtgtgaacctaa |
32126350 |
T |
|
| Q |
308 |
ggacttcaattgtgattggagggtatcagttggagaataatct |
350 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32126349 |
ggacttctattgtgattggagggtatcagttggagaataatct |
32126307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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