View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2125_low_34 (Length: 365)

Name: NF2125_low_34
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2125_low_34
NF2125_low_34
[»] chr6 (25 HSPs)
chr6 (11-349)||(6394900-6395238)
chr6 (11-293)||(6426547-6426829)
chr6 (11-288)||(6410042-6410319)
chr6 (23-288)||(14820741-14821003)
chr6 (11-285)||(6432197-6432471)
chr6 (23-288)||(6416014-6416279)
chr6 (11-332)||(7119193-7119514)
chr6 (11-332)||(7131671-7131992)
chr6 (22-284)||(6423264-6423526)
chr6 (23-278)||(6589119-6589374)
chr6 (11-164)||(6594516-6594669)
chr6 (11-161)||(6402896-6403046)
chr6 (12-338)||(10579473-10579798)
chr6 (13-161)||(7994095-7994243)
chr6 (11-338)||(6596664-6596991)
chr6 (11-161)||(6585150-6585300)
chr6 (26-161)||(8913897-8914033)
chr6 (15-91)||(12102306-12102382)
chr6 (11-288)||(19632475-19632749)
chr6 (16-155)||(11936194-11936333)
chr6 (16-155)||(11948174-11948313)
chr6 (23-82)||(14818430-14818489)
chr6 (24-76)||(9411404-9411456)
chr6 (11-68)||(14802372-14802429)
chr6 (256-288)||(6403162-6403194)
[»] chr7 (3 HSPs)
chr7 (30-288)||(15091937-15092195)
chr7 (25-288)||(10614643-10614906)
chr7 (67-155)||(7977670-7977758)
[»] chr3 (4 HSPs)
chr3 (23-288)||(13470518-13470783)
chr3 (11-242)||(51113613-51113844)
chr3 (12-288)||(51764226-51764502)
chr3 (11-95)||(51120872-51120956)
[»] chr4 (23 HSPs)
chr4 (30-288)||(21834164-21834422)
chr4 (30-162)||(53761684-53761816)
chr4 (11-155)||(55908647-55908791)
chr4 (15-220)||(570391-570593)
chr4 (11-155)||(1524405-1524549)
chr4 (11-155)||(1600455-1600599)
chr4 (11-155)||(1548345-1548487)
chr4 (13-148)||(7225809-7225944)
chr4 (11-93)||(532225-532307)
chr4 (12-155)||(8187010-8187153)
chr4 (13-73)||(1519143-1519203)
chr4 (11-140)||(553515-553644)
chr4 (22-155)||(659756-659889)
chr4 (12-73)||(8184031-8184092)
chr4 (11-144)||(12116505-12116638)
chr4 (23-112)||(55505070-55505159)
chr4 (100-160)||(641040-641100)
chr4 (103-155)||(12120061-12120113)
chr4 (11-49)||(640951-640989)
chr4 (23-77)||(1537764-1537818)
chr4 (11-73)||(12121458-12121520)
chr4 (99-144)||(3438496-3438541)
chr4 (190-278)||(532401-532489)
[»] chr1 (3 HSPs)
chr1 (11-288)||(19468285-19468562)
chr1 (105-288)||(9581198-9581384)
chr1 (180-259)||(9586844-9586923)
[»] chr2 (2 HSPs)
chr2 (11-155)||(1037583-1037727)
chr2 (11-155)||(45245004-45245148)
[»] scaffold0295 (1 HSPs)
scaffold0295 (11-155)||(543-687)
[»] scaffold0807 (1 HSPs)
scaffold0807 (11-150)||(1388-1527)
[»] chr8 (6 HSPs)
chr8 (15-126)||(21235598-21235709)
chr8 (11-155)||(18315192-18315336)
chr8 (30-154)||(17636317-17636445)
chr8 (16-155)||(28246214-28246353)
chr8 (11-72)||(27922544-27922605)
chr8 (12-154)||(34936083-34936225)
[»] chr5 (4 HSPs)
chr5 (13-161)||(20477995-20478143)
chr5 (11-224)||(41889401-41889617)
chr5 (11-67)||(41901542-41901598)
chr5 (11-144)||(32267511-32267641)


Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 349
Target Start/End: Original strand, 6394900 - 6395238
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6394900 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 6394999  T
Q  111 atgtttaagcttacaacatttctttaaaacttgacaaataccttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaataggggaaaatggaa 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6395000 atgtttaagcttacaacatttctttaaaacttgacaaataccttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaattggggaaaatggaa 6395099  T
Q  211 gtaaacattatgattatttcatctattaaccagtgatttctacccaaatagagagagtttaactgagggtatacaccagaatgcccaacagtctctttcc 310  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6395100 gtaaacattatgattatttcatctattaaccagtaatttgtacccaaatagagagagtttaactgagggtatacaccagaatgcccaacagtctctttcc 6395199  T
Q  311 caatacatgtgttttgcattttaatctcggtaagcaaag 349  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  6395200 caatacatgtgttttccattttaatctcggtaagcaaag 6395238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 11 - 293
Target Start/End: Original strand, 6426547 - 6426829
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    ||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6426547 catcatcaatgcttgtgtttgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacgtttgaacagaaagctaagttcaa 6426646  T
Q  111 atgtttaagcttacaacatttctttaaaacttgacaaataccttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaataggggaaaatggaa 210  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||    ||||    ||||||||||||||||||||| |||||||||||||    
T  6426647 atgtttaagcttacaacatttccttaaaacttcacaaataccttcagatatttcacggcaaaccttcaaatcaagtagctgtaaattggggaaaatggaa 6426746  T
Q  211 gtaaacattatgattatttcatctattaaccagtgatttctacccaaatagagagagtttaactgagggtatacaccagaatg 293  Q
    | | |||||||||| ||||||||  |||||||   ||||||||||| ||||||||| || || ||||||||||||||||||||    
T  6426747 gcatacattatgatgatttcatcacttaaccatgaatttctacccagatagagagacttcaattgagggtatacaccagaatg 6426829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 6410042 - 6410319
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    ||||||||||||||||||||||| |||||||||||| ||||| ||||||| ||||||||||||||||||| |||||||||   ||  | ||||||| |||    
T  6410042 catcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttttttgcaataggctaagtccaa 6410141  T
Q  111 atgtttaagcttacaacatttctttaaaacttgacaaataccttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaataggggaaaatggaa 210  Q
    ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||   |||||  |||||||||||||| ||||||| ||| |||||||||    
T  6410142 atgcttaagcttacaacatttctgtaaaacttgacaaataccttcagatatttgctggcaacccgtcaaatcaagtagttgtaaattgggaaaaatggaa 6410241  T
Q  211 gtaaacattatgattatttcatctattaaccagtgatttctacccaaatagagagagtttaactgagggtatacacca 288  Q
    | |||||  ||||||||||||||  ||||| |   |||   | ||||||||||||| ||||| |||||||||||||||    
T  6410242 gcaaacaaaatgattatttcatcacttaacgatgtattgtaatccaaatagagagactttaattgagggtatacacca 6410319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 23 - 288
Target Start/End: Original strand, 14820741 - 14821003
Alignment:
Q  23 ttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagctt 122  Q
    |||||||||| |||||||||||||| | || ||||||||||||||| ||||||||||||||||||  |||||| ||  ||||||||||||||||||||||    
T  14820741 ttgtatttgataagttcaacacctctaacttgggaactgcaaagttaattccatgtagtttcactcctgaacaaaattctaagttcaaatgtttaagctt 14820840  T
Q  123 acaacatttctttaaaacttgacaaataccttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaataggggaaaatggaagtaaacattatg 222  Q
    |||||||||| ||||| |||||||||||||||||||||  |  ||| | | ||| ||||||||||||| |||||  ||||||||||||| | |||  |||    
T  14820841 acaacatttccttaaaccttgacaaataccttcagata--taggagaatcttgt-aaatcaagtagctttaaatttgggaaaatggaagcatacaaaatg 14820937  T
Q  223 attatttcatctattaaccagtgatttct-acccaaatagagagagtttaactgagggtatacacca 288  Q
    |||||||||||  ||||||| ||| || | ||||||||||||||| || || |||||||||||||||    
T  14820938 attatttcatcatttaacca-tgaattgtgacccaaatagagagacttcaattgagggtatacacca 14821003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 6432197 - 6432471
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| |||||||||  |||  | |||||||||||    
T  6432197 catcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttttatacaataggctaagttcaa 6432296  T
Q  111 atgtttaagcttacaacatttctttaaaacttgacaaataccttcagatat---ttgtgagcaacgtgtcaaatcaagtagctgtaaataggggaaaatg 207  Q
    ||||||||| ||||||||| || |||||||||||||||||||||||  |||    ||  | |||||   |||||||||  | || |||| ||||||||||    
T  6432297 atgtttaagtttacaacatctccttaaaacttgacaaataccttcatttatacgatgacaccaacg---caaatcaagatgttgcaaattggggaaaatg 6432393  T
Q  208 gaagtaaacattatgattatttcatctattaaccagtgatttct-acccaaatagagagagtttaactgagggtataca 285  Q
    |||| ||||||||||||  ||||||   ||||||| ||| || | ||||||||||||||| ||||||||||||||||||    
T  6432394 gaagcaaacattatgatcctttcattccttaacca-tgaattgtgacccaaatagagagactttaactgagggtataca 6432471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 23 - 288
Target Start/End: Original strand, 6416014 - 6416279
Alignment:
Q  23 ttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagctt 122  Q
    |||||||||||||||||||||||||||| | ||||||| |||||| |||||||||||| |||||||||  ||| || ||||||||||||||   || |||    
T  6416014 ttgtatttgacaagttcaacacctccaggttgggaactacaaagtccattccatgtagcttcacttttttacaaaaggctaagttcaaatgcccaatctt 6416113  T
Q  123 acaacatttctttaaaacttgacaaataccttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaataggggaaaatggaagtaaacattatg 222  Q
    ||||||| ||||||||||||||||||||||||||||||   |    |||||  |||||||||| ||||| |||| ||||||  |||||| ||||||||||    
T  6416114 acaacatatctttaaaacttgacaaataccttcagataagagattacaacgattcaaatcaagcagctgcaaattggggaagttggaagaaaacattatg 6416213  T
Q  223 attatttcatctattaaccagtgatttctacccaaatagagagagtttaactgagggtatacacca 288  Q
    ||   ||||||  ||||||| | |||| | |||||||||||||| ||||| |||||||||||||||    
T  6416214 ataccttcatcgcttaaccatttattttttcccaaatagagagactttaattgagggtatacacca 6416279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 332
Target Start/End: Original strand, 7119193 - 7119514
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    ||||||||||  | |||| ||||||||||||||||||||||| | ||||  |||||||||||||| |||| |||||| ||||||||   |||||||||||    
T  7119193 catcatcaaccttcgtatctgacaagttcaacacctccagctggtgaacaacaaagttcattccaagtagcttcactcttgaacagtgggctaagttcaa 7119292  T
Q  111 atgtttaagcttacaacatttctttaaaacttgacaaataccttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaataggggaaaatggaa 210  Q
    |||||||| |||| ||||| || |||||||||||||||||||||||||||| |    ||||    |||||||||| || ||||||| |||||||| ||||    
T  7119293 atgtttaatcttagaacatctccttaaaacttgacaaataccttcagatatgttattgcaagtattcaaatcaagaagttgtaaattggggaaaaaggaa 7119392  T
Q  211 gtaaacattatgattatttcatctattaaccagtgatttctacccaaatagagagagtttaactgagggtatacaccagaatgcccaacagtctctttcc 310  Q
    |  || ||||  ||| |||||||  ||||||    ||||||||| ||||||||||| ||||||||||| ||||||| ||||| ||| ||| |||||||||    
T  7119393 gctaatattacaattttttcatcagttaaccgtaaatttctacctaaatagagagactttaactgaggatatacactagaattccctacactctctttcc 7119492  T
Q  311 caatacatgtgttttgcatttt 332  Q
    | |||  ||||| || ||||||    
T  7119493 ctatagctgtgtattccatttt 7119514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 332
Target Start/End: Original strand, 7131671 - 7131992
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    ||||||||||  | |||| ||||||||||||||||||||||| | ||||  |||||||||||||| |||| |||||| ||||||||   |||||||||||    
T  7131671 catcatcaaccttcgtatctgacaagttcaacacctccagctggcgaacaacaaagttcattccaagtagcttcactcttgaacagtgggctaagttcaa 7131770  T
Q  111 atgtttaagcttacaacatttctttaaaacttgacaaataccttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaataggggaaaatggaa 210  Q
    |||||||| |||| ||||| || |||||||||||||||||||||||||||| |    ||||    |||||||||| || ||||||| |||||||| ||||    
T  7131771 atgtttaatcttagaacatctccttaaaacttgacaaataccttcagatatgttattgcaagtattcaaatcaagaagttgtaaattggggaaaaaggaa 7131870  T
Q  211 gtaaacattatgattatttcatctattaaccagtgatttctacccaaatagagagagtttaactgagggtatacaccagaatgcccaacagtctctttcc 310  Q
    |  || ||||  ||| |||||||  ||||||    ||||||||| ||||||||||| ||||||||||| ||||||| ||||| ||| ||| |||||||||    
T  7131871 gctaatattacaattttttcatcagttaaccgtaaatttctacctaaatagagagactttaactgaggatatacactagaattccctacactctctttcc 7131970  T
Q  311 caatacatgtgttttgcatttt 332  Q
    | |||  ||||| || ||||||    
T  7131971 ctatagctgtgtattccatttt 7131992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 22 - 284
Target Start/End: Original strand, 6423264 - 6423526
Alignment:
Q  22 cttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagct 121  Q
    ||||||||||||||||||||||||||||||| |||||||  |||||||||| || |||| ||||||| |  |||  | ||||||||||||||||||||||    
T  6423264 cttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcattgcacgtagcttcacttgttcacaataggctaagttcaaatgtttaagct 6423363  T
Q  122 tacaacatttctttaaaacttgacaaataccttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaataggggaaaatggaagtaaacattat 221  Q
     || |||||||  |||||| ||||||||||| ||| |||||||   |||||   ||||||||||||| | |||||  ||||||||||||| |||||||||    
T  6423364 cacgacatttccgtaaaacatgacaaataccatcaaatatttgatggcaacccttcaaatcaagtagttttaaattagggaaaatggaagcaaacattat 6423463  T
Q  222 gattatttcatctattaaccagtgatttctacccaaatagagagagtttaactgagggtatac 284  Q
    ||| ||||||||  |||||||   | |   ||||||||||||||| ||||| |||||||||||    
T  6423464 gatgatttcatcacttaaccacgaagtgtaacccaaatagagagactttaattgagggtatac 6423526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 23 - 278
Target Start/End: Complemental strand, 6589374 - 6589119
Alignment:
Q  23 ttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagctt 122  Q
    |||||||||||||||||||||||||||||  ||||||| |||||||||||||| |||| ||||||||   |||||| ||||||||||||||  ||| |||    
T  6589374 ttgtatttgacaagttcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaaggctaagttcaaatgcctaatctt 6589275  T
Q  123 acaacatttctttaaaacttgacaaataccttcagatat-ttgtgagcaacgtgtcaaatcaagtagctgtaaataggggaaaatggaagtaaacattat 221  Q
    ||||||| |  | || |||||||||||||||| |||||| || | | |||    | |||||||| | || ||||| |||||||||||||| |||||||||    
T  6589274 acaacatcttctcaatacttgacaaatacctttagatatgttatta-caagaattgaaatcaagcacctctaaattggggaaaatggaagcaaacattat 6589176  T
Q  222 gattatttcatctattaaccagtgatttctacccaaatagagagagtttaactgagg 278  Q
    |||  || ||||  |||||||   |||| |||||||||||||||| ||||| |||||    
T  6589175 gatatttgcatcacttaaccatgaatttttacccaaatagagagactttaattgagg 6589119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 164
Target Start/End: Complemental strand, 6594669 - 6594516
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    ||||||||||   |||||||||||||| |||||||||||| | |||||||  |||||| ||||||||||| |||||| |||||||    | ||||| |||    
T  6594669 catcatcaacctctgtatttgacaagtacaacacctccagtttgggaactaaaaagtttattccatgtagcttcactcttgaacacccggataagtacaa 6594570  T
Q  111 atgtttaagcttacaacatttctttaaaacttgacaaataccttcagatatttg 164  Q
    |||| ||| |||| ||||| || |||||||||||||||||||||||||||||||    
T  6594569 atgtgtaatcttataacatctccttaaaacttgacaaataccttcagatatttg 6594516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 6402896 - 6403046
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    ||||||||||  | |||| ||||||||||||||| || || | ||||||||||||||| |||||| |||| |||||| |||||||   || |||||||||    
T  6402896 catcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagtttattccaagtagcttcactcttgaacacccagttaagttcaa 6402995  T
Q  111 atgtttaagcttacaacatttctttaaaacttgacaaataccttcagatat 161  Q
    |||  |||  ||||||||| || ||||||||||||||||||||||||||||    
T  6402996 atgcctaatgttacaacatctccttaaaacttgacaaataccttcagatat 6403046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 338
Target Start/End: Complemental strand, 10579798 - 10579473
Alignment:
Q  12 atcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaa 111  Q
    |||||||||  |||||| ||||||||||||||||||||||| ||||| | |||  || |||| | || | |||||| ||| |||    ||||||||||||    
T  10579798 atcatcaacttttgtatatgacaagttcaacacctccagctggggaattacaatctttattctaagtcgcttcactcttggacatttggctaagttcaaa 10579699  T
Q  112 tgtttaagcttacaacatttctttaaaacttgacaaataccttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaataggggaaaatggaag 211  Q
    || |||| ||||| |||| |   | |||||||| |||||||||||||||| | |  ||||    |||||||||| ||||| |||| |||||||| |||||    
T  10579698 tgcttaatcttaccacatcttcctgaaacttgaaaaataccttcagatatgtattcgcaagtattcaaatcaagcagctgcaaattggggaaaaaggaag 10579599  T
Q  212 taaacattatgattatttcatctattaaccagtgatttctacccaaatagagagagtttaactgagggtatacaccagaatgcccaacagtctctttccc 311  Q
      |||||||| || ||||||||   |||| |   ||||||||||||||||||||| ||||| ||| ||||||||||||||| | | ||| ||| | |||     
T  10579598 ctaacattataatcatttcatcacgtaacaatgaatttctacccaaatagagagattttaattga-ggtatacaccagaattctctacactctttgtcca 10579500  T
Q  312 aatacatgtgttttgcattttaatctc 338  Q
    ||||  |||||||| |||||| |||||    
T  10579499 aatagctgtgttttccattttgatctc 10579473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 7994243 - 7994095
Alignment:
Q  13 tcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaat 112  Q
    |||| ||| ||||||||||||| |||||||||||| ||||  |||||| |||||||||||||  |||| |||||| ||| |||    |||| ||||||||    
T  7994243 tcattaacccttgtatttgacatgttcaacacctctagcttcggaactacaaagttcattcctagtagcttcactcttgtacaatcggctatgttcaaat 7994144  T
Q  113 gtttaagcttacaacatttctttaaaacttgacaaataccttcagatat 161  Q
    |  | | ||||||||||||| ||||||| | ||||||||||||||||||    
T  7994143 gcctgatcttacaacatttccttaaaacgtaacaaataccttcagatat 7994095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 338
Target Start/End: Complemental strand, 6596991 - 6596664
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    ||||||||||  ||||| |||||||||||||||||||||||| ||||| | ||||||| ||| || || | |||||  |||||||    ||| |||||||    
T  6596991 catcatcaacatttgtacttgacaagttcaacacctccagctggggaatttcaaagtttatttcaagtcgcttcacacttgaacattcggctcagttcaa 6596892  T
Q  111 atgtttaagcttacaacatttctttaaaacttgacaaataccttcagatat-ttgtgagcaacgtgtcaaatcaagtagctgtaaataggggaaaatgga 209  Q
    ||| |||| ||||  |||| || | ||||||||||||||||||||||| || || | |  |   | | || ||||| ||||| ||||  || |||| |||    
T  6596891 atgcttaatcttatcacatctcctgaaaacttgacaaataccttcagaaatgttattattagaatat-aagtcaagcagctgcaaattaggaaaaaagga 6596793  T
Q  210 agtaaacattatgattatttcatctattaaccagtgatttctacccaaatagagagagtttaactgagggtatacaccagaatgcccaacagtctctttc 309  Q
    ||  ||  |||| ||  ||||||   |||||||   ||||||||||||||||||||| ||||| |||||||||||| |||||| | | ||| ||||  ||    
T  6596792 agctaatcttataatattttcattacttaaccaaaaatttctacccaaatagagagactttaattgagggtatacatcagaattctctacactctccgtc 6596693  T
Q  310 ccaatacatgtgttttgcattttaatctc 338  Q
    ||||||  ||||||||||||||| |||||    
T  6596692 ccaatagctgtgttttgcattttgatctc 6596664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 6585300 - 6585150
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    ||||||||||  |||||| |||||||||||| ||||||| || || ||||  |||||| |||||| |||| |||||| |||||||   ||  ||||||||    
T  6585300 catcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtagcttcactcttgaacacccagtaaagttcaa 6585201  T
Q  111 atgtttaagcttacaacatttctttaaaacttgacaaataccttcagatat 161  Q
    |||  |||  ||| ||||| || ||||||| ||||||||||||||||||||    
T  6585200 atgcctaatattaaaacatctccttaaaacatgacaaataccttcagatat 6585150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 161
Target Start/End: Complemental strand, 8914033 - 8913897
Alignment:
Q  26 tatttgacaagttcaacacc-tccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagcttac 124  Q
    |||||||||| ||||||||  |||| || ||||||| ||||||| ||| || |||| |||||| |||| ||   | | |||||||||||||||| |||||    
T  8914033 tatttgacaaattcaacacaatccaacttgggaactacaaagtttattgcaagtagcttcactcttgatcatccaacgaagttcaaatgtttaatcttac 8913934  T
Q  125 aacatttctttaaaacttgacaaataccttcagatat 161  Q
    ||||| |  ||||||||||||||||||||| ||||||    
T  8913933 aacatcttcttaaaacttgacaaatacctttagatat 8913897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 12102306 - 12102382
Alignment:
Q  15 atcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttg 91  Q
    |||||| | ||||| ||||||||||||||||||||| | ||||||| ||||||||| |||||| |||||||||||||    
T  12102306 atcaactcatgtatgtgacaagttcaacacctccagtttgggaacttcaaagttcaatccatgcagtttcacttttg 12102382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 19632475 - 19632749
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    ||||||||||  ||||||  ||||||| ||||||||| |||| |||||||  |||||| |||||| |||| || ||| |||||||   || |||||||||    
T  19632475 catcatcaacctttgtatacgacaagtccaacacctctagcttgggaactagaaagtttattccaagtaggttaactattgaacatcgagttaagttcaa 19632574  T
Q  111 atgtttaagcttacaacatttctttaaaacttgacaaataccttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaataggggaaaatggaa 210  Q
    |||  | | ||||||||||    ||||||||||||||||| | | |||||| |   |||||||  ||||||||||  |||  |||| ||| ||||  |||    
T  19632575 atgcgttatcttacaacat---cttaaaacttgacaaatagcattagatatgtaatagcaacgattcaaatcaagccgctacaaattgggaaaaaacgaa 19632671  T
Q  211 gtaaacattatgattatttcatctattaaccagtgatttctacccaaatagagagagtttaactgagggtatacacca 288  Q
    |  |||||| | ||  |||||||  ||||||    ||||| ||||||||||||||| ||||| |||||||||||||||    
T  19632672 gcgaacattgtaatcttttcatcacttaaccgtaaatttcgacccaaatagagagactttaattgagggtatacacca 19632749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 11936333 - 11936194
Alignment:
Q  16 tcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtt 115  Q
    ||||| ||||||  |||||||| |||||||||||| | ||||||| ||||||||| |  | |||| |||| | ||||||||  || ||| |||||||||     
T  11936333 tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtc 11936234  T
Q  116 taagcttacaacatttctttaaaacttgacaaataccttc 155  Q
    |||  ||||||||| || ||||||| |||  |||||||||    
T  11936233 taatgttacaacatatcattaaaacatgaacaataccttc 11936194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 11948313 - 11948174
Alignment:
Q  16 tcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtt 115  Q
    ||||| ||||||  |||||||| |||||||||||| | ||||||| ||||||||| |  | |||| |||| | ||||||||  || ||| |||||||||     
T  11948313 tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtc 11948214  T
Q  116 taagcttacaacatttctttaaaacttgacaaataccttc 155  Q
    |||  ||||||||| || ||||||| |||  |||||||||    
T  11948213 taatgttacaacatatcattaaaacatgaacaataccttc 11948174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 14818430 - 14818489
Alignment:
Q  23 ttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtt 82  Q
    |||||||||| |||||||||||||| | || | ||||||||||||| |||||||||||||    
T  14818430 ttgtatttgataagttcaacacctctaacttgagaactgcaaagttaattccatgtagtt 14818489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 9411404 - 9411456
Alignment:
Q  24 tgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccat 76  Q
    ||||| ||||||||||||||||||||||| ||||||  ||||||||| |||||    
T  9411404 tgtatatgacaagttcaacacctccagcttgggaacctcaaagttcaatccat 9411456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 14802372 - 14802429
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagtt 68  Q
    ||||||||||  ||||||||||||| |||||||| |||| || ||||||| |||||||    
T  14802372 catcatcaacctttgtatttgacaaattcaacacttccatcttgggaacttcaaagtt 14802429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 6403162 - 6403194
Alignment:
Q  256 aaatagagagagtttaactgagggtatacacca 288  Q
    ||||||||||| |||||||||||||||||||||    
T  6403162 aaatagagagactttaactgagggtatacacca 6403194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 30 - 288
Target Start/End: Complemental strand, 15092195 - 15091937
Alignment:
Q  30 tgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagcttacaacat 129  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||   || |||||||||||||||||||||| |||||    
T  15092195 tgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacacttaaacatccagttaagttcaaatgtttaagcttataacat 15092096  T
Q  130 ttctttaaaacttgacaaataccttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaataggggaaaatggaagtaaacattatgattattt 229  Q
    ||| ||||||||||| ||||||||| |||||| |   ||||| |   |||||||||||||| ||| | |||||||||||||| ||  ||| |||| ||||    
T  15092095 ttccttaaaacttgagaaataccttgagatatgttatagcaatgacccaaatcaagtagctctaagttggggaaaatggaagcaagtattctgatgattt 15091996  T
Q  230 catctattaaccagtgatttctacccaaatagagagagtttaactgagggtatacacca 288  Q
    ||||  |||||| || |||   | ||||||||||||| ||||| |||||||||||||||    
T  15091995 catcacttaaccggtaattgtgagccaaatagagagactttaattgagggtatacacca 15091937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 288
Target Start/End: Original strand, 10614643 - 10614906
Alignment:
Q  25 gtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagcttac 124  Q
    |||||||||||||||||||||||||| | ||||||  ||| |||||||||| |||| |||||||||  |||  | ||||||||||||||  ||| |||||    
T  10614643 gtatttgacaagttcaacacctccagattgggaacaacaacgttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatcttac 10614742  T
Q  125 aacatttctttaaaacttgacaaataccttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaataggggaaaatggaagtaaacattatgat 224  Q
    ||||| || ||||||||||||||||||||||| |||   |   ||||||  |||||||||| || || |||| ||||||| |||||| |||| |||| ||    
T  10614743 aacatatccttaaaacttgacaaataccttcatataagagattgcaacgattcaaatcaagcagttgcaaattggggaaattggaagcaaactttataat 10614842  T
Q  225 tatttcatctattaaccagtgatttctacccaaatagagagagtttaactgagggtatacacca 288  Q
       ||||||  ||||||| |||||| | |||||||||||||| ||||| |||||||||||||||    
T  10614843 gccttcatcgcttaaccactgattttttcccaaatagagagactttaattgagggtatacacca 10614906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 7977670 - 7977758
Alignment:
Q  67 ttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagcttacaacatttctttaaaacttgacaaataccttc 155  Q
    ||||||||| |||| |||||  |||||||  | |||| ||| |||||| |||  ||||||||| || |||||||||||| |||||||||    
T  7977670 ttcattccacgtagattcacccttgaacaacaggctaggtttaaatgtctaatgttacaacatctccttaaaacttgaccaataccttc 7977758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 23 - 288
Target Start/End: Complemental strand, 13470783 - 13470518
Alignment:
Q  23 ttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagctt 122  Q
    |||||||||||||||||||||||||||| | ||||||  |||||||||||||| |||| |||||||||  |||  | ||||||||||||||  ||| |||    
T  13470783 ttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcacttttttacaataggctaagttcaaatgcctaatctt 13470684  T
Q  123 acaacatttctttaaaacttgacaaataccttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaataggggaaaatggaagtaaacattatg 222  Q
    ||||||| || |||||||||||||||||||||  ||||   |   |||||   |||||||||| ||||| |||| ||||||| |||||| ||||||||||    
T  13470683 acaacatatccttaaaacttgacaaataccttttgataagagattgcaacaattcaaatcaagcagctgcaaattggggaaattggaagcaaacattatg 13470584  T
Q  223 attatttcatctattaaccagtgatttctacccaaatagagagagtttaactgagggtatacacca 288  Q
    ||   ||||||  ||||||| |||||| | |||||||||||||| ||||| |||||||||||||||    
T  13470583 atgccttcatcacttaaccattgattttttcccaaatagagagactttaattgagggtatacacca 13470518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 51113844 - 51113613
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    ||||||||||  |||||||||||||||  ||||||||||| | |||| || |||||||||||||| |||| |||| |||||||||| ||||||| |||||    
T  51113844 catcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtagcttcagttttgaacagtaagctaatttcaa 51113745  T
Q  111 atgtttaagcttacaacatttctttaaaacttgacaaataccttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaataggggaaaatggaa 210  Q
    |||  |||  ||||||||| ||||||||||||||||||||||||| ||||| |   ||||| | || |||||||| ||||| | || |||||||||||||    
T  51113744 atgcctaattttacaacatctctttaaaacttgacaaataccttcggatatctcatagcaatgagttaaatcaagaagctgcagattggggaaaatggaa 51113645  T
Q  211 gtaaacattatgattatttcatctattaacca 242  Q
    | || |||||||||  | |||||| |||||||    
T  51113644 gcaatcattatgatgctctcatctcttaacca 51113613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 288
Target Start/End: Complemental strand, 51764502 - 51764226
Alignment:
Q  12 atcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaa 111  Q
    |||||||||  |||||  ||||||||  |||||||||||||  ||||||||||||||||||||| |||| |||||| |||||||    | || |||||||    
T  51764502 atcatcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaagttcattccaagtagcttcactcttgaacattcggataggttcaaa 51764403  T
Q  112 tgtttaagcttacaacatttctttaaaacttgacaaataccttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaataggggaaaatggaag 211  Q
    ||  ||| |||| ||||| || ||||||||| ||| | ||||| ||||||  |   ||||    | |||||||| ||||| |||| ||||||||||||||    
T  51764402 tgcctaatcttagaacatctccttaaaacttcacagacacctttagatatgcgattgcaagaattaaaatcaagcagctgcaaattggggaaaatggaag 51764303  T
Q  212 taaacattatgattatttcatctattaaccagtgatttctacccaaatagagagagtttaactgagggtatacacca 288  Q
     ||||||||||||  |||||||  |||||||   ||||  ||||| ||||||||| ||||| |||||||||||||||    
T  51764302 caaacattatgatgctttcatcacttaaccatgtattttcacccagatagagagactttaattgagggtatacacca 51764226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 51120956 - 51120872
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaaca 95  Q
    |||||||||| |||||||  |||||||||||||||||||  | | ||||| |||||||||||||||| ||||||||| |||||||    
T  51120956 catcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcagtttcactcttgaaca 51120872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 30 - 288
Target Start/End: Complemental strand, 21834422 - 21834164
Alignment:
Q  30 tgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagcttacaacat 129  Q
    |||||||| |||||||||||||| ||||||| ||||||| || | |||||| ||||||||  ||||    | |||||||||||| |||| ||||||||||    
T  21834422 tgacaagtccaacacctccagcttgggaactacaaagttgatactatgtagcttcactttataacaacctgataagttcaaatgcttaatcttacaacat 21834323  T
Q  130 ttctttaaaacttgacaaataccttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaataggggaaaatggaagtaaacattatgattattt 229  Q
    ||| |||||||||  ||||||||||| ||||| |||| | ||   ||||||||||| |||||||||| ||||||||| |||| ||||||||||||| |||    
T  21834322 ttccttaaaacttcgcaaataccttctgatatctgtgtggaagaagtcaaatcaagcagctgtaaattggggaaaattgaagcaaacattatgattcttt 21834223  T
Q  230 catctattaaccagtgatttctacccaaatagagagagtttaactgagggtatacacca 288  Q
    ||||  |||||||   ||| |  |||||| ||||||| ||||| |||||||| ||||||    
T  21834222 catcatttaaccatgaattgcggcccaaaaagagagactttaattgagggtacacacca 21834164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 53761816 - 53761684
Alignment:
Q  30 tgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagcttacaacat 129  Q
    ||||||||||||| |||| |||| ||||||| ||||||||||||||  ||| |||||| |||||||    ||||||||||||||  |||  |||||||||    
T  53761816 tgacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaacactcggctaagttcaaatgcctaatgttacaacat 53761717  T
Q  130 ttctttaaaacttgacaaataccttcagatatt 162  Q
     || ||||||||||||||||||||| |||||||    
T  53761716 ctccttaaaacttgacaaatacctttagatatt 53761684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 55908791 - 55908647
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    |||||||||| | ||||| ||||||||| |||||||| |  || ||||||  |||||| |||| | ||||||||||| |||||||| | ||||| |||||    
T  55908791 catcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaacagtaggctaaattcaa 55908692  T
Q  111 atgtttaagcttacaacatttctttaaaacttgacaaataccttc 155  Q
    |||| ||| |||||||||| || ||| ||||| ||||||||||||    
T  55908691 atgtctaaccttacaacatctccttagaacttcacaaataccttc 55908647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 570391 - 570593
Alignment:
Q  15 atcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgt 114  Q
    |||||| | ||||| |||||||||||||||||| || | | ||||| ||||||||| |||| | |||||||||||||| |||  |||||||||||||||     
T  570391 atcaactcctgtatatgacaagttcaacacctcgagtttgagaacttcaaagttcaatccacgcagtttcacttttgagcagtgagctaagttcaaatgc 570490  T
Q  115 ttaagcttacaacatttctttaaaacttgacaaataccttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaataggggaaaatggaagtaa 214  Q
     |||| |||||||||    ||||||||||||||||||  || ||||| ||   ||||    | |||||||||| ||| |||| ||||||||| |||| ||    
T  570491 ctaagtttacaacat---cttaaaacttgacaaatactatcggatatctgattgcaataacttaaatcaagtatctgcaaattggggaaaatagaagcaa 570587  T
Q  215 acatta 220  Q
    ||||||    
T  570588 acatta 570593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 1524549 - 1524405
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    |||||||||| ||||||  |||||| |||||||||||||  | ||||||| |||||||||||||||| ||||  | ||| ||||||   |||||||||||    
T  1524549 catcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaagttcattccatgaagttctattttagaacagttggctaagttcaa 1524450  T
Q  111 atgtttaagcttacaacatttctttaaaacttgacaaataccttc 155  Q
    |||  |||| ||||||||| || ||||||| |||  |||||||||    
T  1524449 atgcctaagtttacaacatctccttaaaacctgaagaataccttc 1524405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 1600455 - 1600599
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    |||| ||||| ||||||| ||||||||||||||||||||| |   ||||| |||||||||||||  | || |||| | |||||||    |||||||||||    
T  1600455 catcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggctaagttcaa 1600554  T
Q  111 atgtttaagcttacaacatttctttaaaacttgacaaataccttc 155  Q
    |||| |||  ||| || || || ||||||||||||||||||||||    
T  1600555 atgtctaattttagaaaatctccttaaaacttgacaaataccttc 1600599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 1548487 - 1548345
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattcc-atgtagtttcacttttgaacagaaagctaagttca 109  Q
    |||||||||  ||||||| ||||||||||||||||||||| | ||||| | ||||||||| ||| | |||| ||||||||| |||    |||||||||||    
T  1548487 catcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtccaaagtagcttcacttttaaactacgagctaagttca 1548388  T
Q  110 aatgtttaagcttacaacatttctttaaaacttgacaaataccttc 155  Q
    | ||| ||| ||||||||||    ||||||||| ||||||||||||    
T  1548387 actgtctaatcttacaacat---cttaaaacttcacaaataccttc 1548345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 7225944 - 7225809
Alignment:
Q  13 tcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaat 112  Q
    |||||||| ||||||| |||||||||||| |||||||  ||| ||||| ||||||||||     |||| |||||| ||| |||| | | |||||||||||    
T  7225944 tcatcaactcttgtatgtgacaagttcaagacctccaattcgagaacttcaaagttcatgttgcgtagcttcactcttggacagtaggataagttcaaat 7225845  T
Q  113 gtttaagcttacaacatttctttaaaacttgacaaa 148  Q
    || ||| |||||||||| ||  ||||||||||||||    
T  7225844 gtctaatcttacaacatctccgtaaaacttgacaaa 7225809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 532225 - 532307
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaa 93  Q
    ||||||||| | |||||| |||||||||||||||||| |||| ||| ||| |||||||||||||| |||| |||||| |||||    
T  532225 catcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattccaagtagattcactcttgaa 532307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 8187153 - 8187010
Alignment:
Q  12 atcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaa 111  Q
    ||||||||| ||||||| ||||||||||||||||||||| | || || | |||||||||||||    ||    ||| ||| |||| | ||||||||||||    
T  8187153 atcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcattccggagagcccaactcttggacagtaggctaagttcaaa 8187054  T
Q  112 tgtttaagcttacaacatttctttaaaacttgacaaataccttc 155  Q
    |   ||| || ||||||| |||| ||||||||||||||||||||    
T  8187053 tccctaatctcacaacatctcttcaaaacttgacaaataccttc 8187010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 1519203 - 1519143
Alignment:
Q  13 tcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattc 73  Q
    |||||||| ||||||| |||||||||||||||||| || | ||||||| ||||||||||||    
T  1519203 tcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcattc 1519143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 553515 - 553644
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    |||||||||| ||||||  ||||||||||||||||||||| | | |||||  |||||||| |  | |||  |||||| ||||||||   | |||||||||    
T  553515 catcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagttcaatgtacgtaacttcactcttgaacagcgggttaagttcaa 553614  T
Q  111 atgtttaagcttacaacatttctttaaaac 140  Q
    |||| |||  ||||||||| || |||||||    
T  553615 atgtctaatgttacaacatgtccttaaaac 553644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 659756 - 659889
Alignment:
Q  22 cttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagct 121  Q
    ||||||| |||||||||||||||||| || | ||||||| |||| || ||| |  |||| ||| || |||||||| | |||||||| |||| | |||  |    
T  659756 cttgtatgtgacaagttcaacacctctagtttgggaacttcaaaatttattactcgtagcttccctcttgaacagcaggctaagtttaaatatctaatgt 659855  T
Q  122 tacaacatttctttaaaacttgacaaataccttc 155  Q
    |||||||| || |||||| ||||| |||| ||||    
T  659856 tacaacatctccttaaaatttgaccaatatcttc 659889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 8184092 - 8184031
Alignment:
Q  12 atcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattc 73  Q
    ||||||||| ||||||| |||||||||||||||||| || |  |||||| ||||||||||||    
T  8184092 atcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttcattc 8184031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 12116638 - 12116505
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    |||||||||| ||||||| |||||||||||||||||| |  |  |||||  |||||||||||| | | ||||| | |||||||||| | ||||||||  |    
T  12116638 catcatcaacacttgtatgtgacaagttcaacacctctaaatttggaacatcaaagttcattctacgcagttttatttttgaacagtaggctaagtttta 12116539  T
Q  111 atgtttaagcttacaacatttctttaaaacttga 144  Q
    |||  | || ||||||||| || |||||| ||||    
T  12116538 atgccttagtttacaacatctccttaaaatttga 12116505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 55505159 - 55505070
Alignment:
Q  23 ttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaat 112  Q
    |||||| |||||||||||||||||| || | ||| |||  |||||||||||||  ||| |||||| |||||||| | |||| ||||||||    
T  55505159 ttgtatatgacaagttcaacacctctagttgggggactctaaagttcattccaattaggttcactgttgaacagtaggctaggttcaaat 55505070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 641040 - 641100
Alignment:
Q  100 gctaagttcaaatgtttaagcttacaacatttctttaaaacttgacaaataccttcagata 160  Q
    ||||||||||||||| |||  ||||||||| || ||||||||||| |||| ||||||||||    
T  641040 gctaagttcaaatgtctaacattacaacatatccttaaaacttgaaaaattccttcagata 641100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 12120113 - 12120061
Alignment:
Q  103 aagttcaaatgtttaagcttacaacatttctttaaaacttgacaaataccttc 155  Q
    |||||||||||| ||| ||||| || ||||||||||||||||| |||||||||    
T  12120113 aagttcaaatgtctaatcttactacttttctttaaaacttgaccaataccttc 12120061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 640951 - 640989
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctcca 49  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  640951 catcatcaacgtttgtatctgacaagttcaacacctcca 640989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 1537818 - 1537764
Alignment:
Q  23 ttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatg 77  Q
    |||||| ||||||||||||||| || || | ||||||| ||||||||||||||||    
T  1537818 ttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattccatg 1537764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 12121520 - 12121458
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattc 73  Q
    ||||||||||  |||||| ||||||||||||||| || || | ||||||| ||||||||||||    
T  12121520 catcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattc 12121458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 3438541 - 3438496
Alignment:
Q  99 agctaagttcaaatgtttaagcttacaacatttctttaaaacttga 144  Q
    |||||||||||||||| ||| |||||||||| || |||||||||||    
T  3438541 agctaagttcaaatgtctaatcttacaacatctccttaaaacttga 3438496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 278
Target Start/End: Original strand, 532401 - 532489
Alignment:
Q  190 tgtaaataggggaaaatggaagtaaacattatgattatttcatctattaaccagtgatttctacccaaatagagagagtttaactgagg 278  Q
    ||||||| |||||||||||| | ||||||||| ||  |||||||| | ||||| ||| |  |||||||||  ||||| |||||||||||    
T  532401 tgtaaattggggaaaatggatgcaaacattataatgctttcatctctcaaccattgactcatacccaaatttagagactttaactgagg 532489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 19468562 - 19468285
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    ||||||||||  |||||| |||||| |||||||||||||||| ||||||| ||||||||| |||| |||| |||||| ||||||||   |||||||| ||    
T  19468562 catcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttcactccaagtagattcactcttgaacagtgggctaagtttaa 19468463  T
Q  111 atgtttaagcttacaacatttctttaaaacttgacaaataccttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaataggggaaaatggaa 210  Q
    |||  |||  ||| ||||  || |||||||||||||||| ||||| ||||| ||   |||     |||||||||| ||||| |||| ||| |||||||||    
T  19468462 atgcctaatattagaacacctccttaaaacttgacaaatgccttccgatatgtggttgcatgagttcaaatcaagcagctgcaaattgggaaaaatggaa 19468363  T
Q  211 gtaaacattatgattatttcatctattaaccagtgatttct-acccaaatagagagagtttaactgagggtatacacca 288  Q
    | ||||||||||||  |||||||  ||||||| ||| |||| | |||| |||||| | ||||| |||||| ||||||||    
T  19468362 gcaaacattatgatgttttcatcgcttaacca-tgaattctcagccaagtagagatactttaattgagggaatacacca 19468285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 288
Target Start/End: Original strand, 9581198 - 9581384
Alignment:
Q  105 gttcaaatgtttaagcttacaacatttctttaaaacttgacaaatacc---ttcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaatagggg 201  Q
    |||||||||| ||| || ||||||| | ||||||||||||||||||||   || |||||| |   ||||| |   || |||||| ||||| |||| ||||    
T  9581198 gttcaaatgtctaatctgacaacatctttttaaaacttgacaaatacctcttttagatatgttacagcaatggcgcagatcaagcagctgcaaattgggg 9581297  T
Q  202 aaaatggaagtaaacattatgattatttcatctattaaccagtgatttctacccaaatagagagagtttaactgagggtatacacca 288  Q
    ||||| |||| ||||||||||||  ||| |||| |||| || |||||   ||||||||  ||||| ||||| ||||||  |||||||    
T  9581298 aaaattgaagcaaacattatgatgtttttatctcttaaacattgattgtgacccaaatcaagagactttaattgagggcttacacca 9581384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 9586844 - 9586923
Alignment:
Q  180 atcaagtagctgtaaataggggaaaatggaagtaaacattatgattatttcatctattaaccagtgatttctacccaaat 259  Q
    |||||| ||||| |||| ||||||||| |||| ||||||||||||  ||| |||| ||||||| ||||| | ||||||||    
T  9586844 atcaagcagctgcaaattggggaaaattgaagcaaacattatgatgtttttatctcttaaccattgattgcgacccaaat 9586923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 1037727 - 1037583
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    |||||||||| | ||||| ||||||||| |||||||| |  || ||||||  |||||| |||| | ||||||||||| ||||| || | ||||| |||||    
T  1037727 catcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaatagtaggctaaattcaa 1037628  T
Q  111 atgtttaagcttacaacatttctttaaaacttgacaaataccttc 155  Q
    |||| ||| |||||||||| || ||||||||| ||||||||||||    
T  1037627 atgtctaaccttacaacatctccttaaaacttcacaaataccttc 1037583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 45245148 - 45245004
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    ||||||||||  |||| | |||||| ||||||||||| || |  |||||| ||||||| |||||| ||| || || | |||||||| || ||||||| ||    
T  45245148 catcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaactaagtttaa 45245049  T
Q  111 atgtttaagcttacaacatttctttaaaacttgacaaataccttc 155  Q
    |||  |||  ||||||||| || ||||||| ||||| || |||||    
T  45245048 atgcctaatgttacaacatctccttaaaacatgacacattccttc 45245004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 687 - 543
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    ||||||| || ||||||| ||||||||| |||||||| |  || ||||||  |||||| |||| | ||||||||||| |||||||| | ||||| |||||    
T  687 catcatcgacacttgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaacagtaggctaaattcaa 588  T
Q  111 atgtttaagcttacaacatttctttaaaacttgacaaataccttc 155  Q
    |||| ||  |||||||||| || ||| ||||| ||||||||||||    
T  587 atgtctagccttacaacatctccttagaacttcacaaataccttc 543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 1527 - 1388
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    ||||||||||  ||||||||||||||| ||||||||| ||||  |||||| ||||||||||| ||  ||| | |||   ||||||  | |||||||||||    
T  1527 catcatcaacatttgtatttgacaagtccaacacctctagcttaggaactacaaagttcatttcaaataggtccacagatgaacaccaggctaagttcaa 1428  T
Q  111 atgtttaagcttacaacatttctttaaaacttgacaaata 150  Q
    |||| ||| |||| ||||| || |||||||||||||||||    
T  1427 atgtctaatcttataacatctccttaaaacttgacaaata 1388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 21235598 - 21235709
Alignment:
Q  15 atcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgt 114  Q
    |||||| | ||||| ||||||||||||||||||||| | ||||||| ||||||||| ||||   |||||||||||||| |||  |||||||||||||||     
T  21235598 atcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactccacacagtttcacttttgagcagtgagctaagttcaaatgc 21235697  T
Q  115 ttaagcttacaa 126  Q
     |||| ||||||    
T  21235698 ctaagtttacaa 21235709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 18315336 - 18315192
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    ||||||||||  |||||| ||||||||||||||||||||| | |||||||  ||||||||||||| |||| |||| | |||||     ||||||||||||    
T  18315336 catcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcattccacgtagcttcattcttgaatcacgagctaagttcaa 18315237  T
Q  111 atgtttaagcttacaacatttctttaaaacttgacaaataccttc 155  Q
     ||| ||| || | ||||  |   |||||||||||||||||||||    
T  18315236 ctgtctaatctcagaacaacttcgtaaaacttgacaaataccttc 18315192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 154
Target Start/End: Complemental strand, 17636445 - 17636317
Alignment:
Q  30 tgacaagttcaacacctccagctcgggaactgcaaagttcat----tccatgtagtttcacttttgaacagaaagctaagttcaaatgtttaagcttaca 125  Q
    ||||||||||||||||||||  | ||||||| ||||||||||    || ||||||||||||| |||||||     |||||||||||||  |||  ||| |    
T  17636445 tgacaagttcaacacctccaatttgggaacttcaaagttcattcgatcgatgtagtttcactcttgaacatcggcctaagttcaaatgcctaatattaga 17636346  T
Q  126 acatttctttaaaacttgacaaatacctt 154  Q
    ||||  | |||||||||||||||||||||    
T  17636345 acatccccttaaaacttgacaaatacctt 17636317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 28246353 - 28246214
Alignment:
Q  16 tcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaatgtt 115  Q
    ||||| ||||||  |||||||| |||||||||||| | ||||||| ||||||||| |  |||||| |||| | |||||||   || ||| |||||||||     
T  28246353 tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgtatgtagcttcagtcttgaacaacgagttaaattcaaatgtc 28246254  T
Q  116 taagcttacaacatttctttaaaacttgacaaataccttc 155  Q
    |||  ||||||||| || ||||||| |||  |||||||||    
T  28246253 taatgttacaacatatcattaaaacatgaacaataccttc 28246214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 27922544 - 27922605
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcatt 72  Q
    ||||||||||  |||||| ||||||||||||||||||||  | ||||||| |||||||||||    
T  27922544 catcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttcatt 27922605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 154
Target Start/End: Complemental strand, 34936225 - 34936083
Alignment:
Q  12 atcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaa 111  Q
    ||||||||| ||||||| |||||||| ||||||||| || |  |||||  ||||| ||||||  || || ||||||||||||||    || |||| ||||    
T  34936225 atcatcaactcttgtatatgacaagtccaacacctctagttttggaacatcaaagatcattctgtgaaggttcacttttgaacaatcggccaagtacaaa 34936126  T
Q  112 tgtttaagcttacaacatttctttaaaacttgacaaatacctt 154  Q
    ||| |||  | ||||||| || ||||||| ||| |||||||||    
T  34936125 tgtctaatgtcacaacatctccttaaaacatgataaatacctt 34936083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 20478143 - 20477995
Alignment:
Q  13 tcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaaat 112  Q
    ||||||||  |||||| ||||||||||||||||||||||| ||||| | ||| ||| |||||| |||| ||| || ||  |||   ||||||||||||||    
T  20478143 tcatcaacatttgtatatgacaagttcaacacctccagctggggaattacaacgtttattccaagtagcttcgctcttcgacatccagctaagttcaaat 20478044  T
Q  113 gtttaagcttacaacatttctttaaaacttgacaaataccttcagatat 161  Q
    |  | | |||||||||| || |||| | |||||||||| ||||||||||    
T  20478043 gccttaacttacaacatctcgttaagaattgacaaatatcttcagatat 20477995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 41889617 - 41889401
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    ||||||||||  |||||| ||| ||||||||||||||||  | |||||||  |||||||||| || |||| |||||| |||||||    | |||||||||    
T  41889617 catcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttcactattgaacatccggataagttcaa 41889518  T
Q  111 atgtttaagcttacaacatttctttaaaacttgacaaatacct---tcagatatttgtgagcaacgtgtcaaatcaagtagctgtaaataggggaaaatg 207  Q
    || | |||  ||||||||| || |||||||||||  |||||||   ||| ||||  |  | |||    |||||||||||||||| ||||  |||||||||    
T  41889517 atatctaatgttacaacatatccttaaaacttgagtaataccttcatcaaatatgcgacaacaattgctcaaatcaagtagctgcaaattagggaaaatg 41889418  T
Q  208 gaagtaaacattatgat 224  Q
    |||| ||||||||||||    
T  41889417 gaagcaaacattatgat 41889401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 41901598 - 41901542
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagt 67  Q
    ||||||||||  |||||| ||||||||||||||||||||| | ||||||| ||||||    
T  41901598 catcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 32267511 - 32267641
Alignment:
Q  11 catcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaagctaagttcaa 110  Q
    ||||||||||  |||| | |||||||||||| |||||||  | ||||||| |||||||||||   | |||||||||| |||||||    | |||||||||    
T  32267511 catcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatt---tctagtttcactgttgaacactgggataagttcaa 32267607  T
Q  111 atgtttaagcttacaacatttctttaaaacttga 144  Q
    |||| |||  ||||||||| || |||||| ||||    
T  32267608 atgtctaatgttacaacatatccttaaaaattga 32267641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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