View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_35 (Length: 362)
Name: NF2125_low_35
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_35 |
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| [»] scaffold0175 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 344
Target Start/End: Complemental strand, 43743238 - 43742919
Alignment:
| Q |
5 |
gagagagatgaaggaaagaaaatgtgnnnnnnnntctaatggtgaaagagcatgataatactgtggtctttctttcatcaaatgactaaaaccaaactga |
104 |
Q |
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| T |
43743238 |
gagagacatggaggaaagaaaatgtgaaaaaaaatctaatggtgaaagagcatgataatactgtggtcttcctttgatcaaatgactaaaaccaaactga |
43743139 |
T |
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| Q |
105 |
tccatggtggaaaagttttagactttccgatgtgaaatagcaccaaacttacaagcgcaagagaaaaagctacacttgaaataaagaaagacacaagtgc |
204 |
Q |
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| T |
43743138 |
tccat--------------aaactttcccatatgaaatagcaccaaacttacaagcgcaagagaaaaagctacacttgaaataaagaaagacacaagtgc |
43743053 |
T |
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| Q |
205 |
tattcatttcatacactttccatcaaaatattatacacttgtattgagctagaaacgtcatcattctctttgtgtgagtaaactccgtactacatcaaat |
304 |
Q |
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| T |
43743052 |
tattcatttcatacactttccatcaaaatattatacacttgtattgagctagaaacgtcatcattctctctgtgtgagtaaactctgtact------tgt |
43742959 |
T |
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| Q |
305 |
atcttatcattgatgtaaactcttcaaagtactaagttgt |
344 |
Q |
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| T |
43742958 |
atcttatcattgatgtaaactcttcaaagtaccaagttgt |
43742919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 11335056 - 11335165
Alignment:
| Q |
39 |
tctaatggtgaaagagcatgataatactgtggtctttctttcatcaaatgactaaaaccaaactgatccatggtggaaaagttttagactttccgatgtg |
138 |
Q |
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| T |
11335056 |
tctagtggtgaaagagcatgataatactgtggtcttcctttgatgaaatgactaaaaccaaactgatccatggtggaaaagttttagactttctcatgtg |
11335155 |
T |
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| Q |
139 |
aaatagcacc |
148 |
Q |
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| T |
11335156 |
aaataacacc |
11335165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 47 - 151
Target Start/End: Original strand, 32079738 - 32079842
Alignment:
| Q |
47 |
tgaaagagcatgataatactgtggtctttctttcatcaaatgactaaaaccaaactgatccatggtggaaaagttttagactttccgatgtgaaatagca |
146 |
Q |
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| T |
32079738 |
tgaaagagcatgataatgctgtggtattcctttgattaaatgattaaaaccaaactgatccatggtgggaaagttttagactttcccatgtgaaatgcca |
32079837 |
T |
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| Q |
147 |
ccaaa |
151 |
Q |
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| T |
32079838 |
ccaaa |
32079842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0175 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 26314 - 26269
Alignment:
| Q |
97 |
caaactgatccatggtggaaaagttttagactttccgatgtgaaat |
142 |
Q |
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| T |
26314 |
caaactgacccatggtggaaaagttttacactttcccatgttaaat |
26269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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