View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_36 (Length: 359)
Name: NF2125_low_36
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_36 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 15 - 359
Target Start/End: Original strand, 45341602 - 45341944
Alignment:
| Q |
15 |
aactataacaacaaattaatacactcatgaatattgaataaataaatttcttaatcagcaaaatgaacacacagattcaaggaaaagacaaatctctaga |
114 |
Q |
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| T |
45341602 |
aactataacaacaaattaatacactcatgaatattgaataaataaatttcttaatcagcaaaatgaacacacagattcaagaaaaagacaaatctctaga |
45341701 |
T |
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| Q |
115 |
aaacaaaaataatcattcttccaaatttaatgaataaatacaaacaaatttgtaatgattaagtttaaaaggtactagaattaaacaagctaaggaaagt |
214 |
Q |
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| T |
45341702 |
aaagaaaaataatcattctcccaaatttaatgaataaatacaaacaaatttgtaatgattaagtttaaaaggtactagaattaaac-----aaggaaagt |
45341796 |
T |
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| Q |
215 |
aaaaattaccagaatgaggaagaagtttacgatgaggtgtatgaatgagtgtgta---nnnnnnnnnnnnnnnnnnaccttcttcctcaaaccccaacaa |
311 |
Q |
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| T |
45341797 |
aaaaattaccagaatgaggaagaagtttacgatgaggtgtatgaatgagtgtgtagttgttgttgttgttgtcgataccttcttcctcaaaccccaacaa |
45341896 |
T |
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| Q |
312 |
atacgacaaagacatcaacgttccagtacgagccccaccaccaccacc |
359 |
Q |
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| T |
45341897 |
atacgacaaagacatcaacgttccagtacgagccccaccaccaccacc |
45341944 |
T |
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