View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2125_low_37 (Length: 356)
Name: NF2125_low_37
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_37 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 5166863 - 5167203
Alignment:
| Q |
1 |
aaaatgattacaaaaaatgccatgaccatcatcttccttttgaactagtaatcgctatgaaggtcatgcttgtaataggaaagaaaaaatgcagcaatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5166863 |
aaaatgattacaaaaaatgccatgaccatcatcttccttttgaaccagtaatcgctatgaaggtcatgcttgtaataggaaagaaaaaatgcagcaatat |
5166962 |
T |
|
| Q |
101 |
aaagagaagttcatgggtaaaagtactagcttgacaccctaactagaa-gatcacgtgtaaaagaaggagcatgaagaaggtgctaaattgaaaatagaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5166963 |
aaagagaagttcatgggtaaaagtactagcttgacaccctaactagaaagatcacgtgtaaaagaaggagcatgaagaaggtgctaaattgaaaatagaa |
5167062 |
T |
|
| Q |
200 |
agaaaaacaagaagaagctttcatgagtaaaacaatgattaatggaaatagagtgtaagaactaagaaccatagcagcaacgtcttcattagcggtttca |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5167063 |
agaaaaacaagaagaagctttcatgagtaaaacaatgattaatggaaatagagtgtaagaactaagaaccatagcagcaacgtcttcattagcggtttca |
5167162 |
T |
|
| Q |
300 |
gacttcagagtgattttcaaatggatatgatgcatatggtg |
340 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5167163 |
gacttcagagtgattttcaaatggatatgatgcatatggtg |
5167203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University