View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_39 (Length: 352)
Name: NF2125_low_39
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_39 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 7 - 343
Target Start/End: Complemental strand, 31321950 - 31321614
Alignment:
| Q |
7 |
tcgaagaatatctacaatcctatttgaaatacaaaatgcagttgattgaatagtaatcataggattaacaccaacagcagttggaagaacactagcatca |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31321950 |
tcgaagaaaatctacaatcctatttgaaatacaaaatgcagttgattgaatagtgatcataggattaacaccaacagcagttggaagaacactagcatca |
31321851 |
T |
|
| Q |
107 |
caaacaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattttgcaacttcccatttgatgagcag |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| |
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| T |
31321850 |
caaacaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagcag |
31321751 |
T |
|
| Q |
207 |
aagtatacaaattccaattctcacctggcgacaatgctccttccattggataaacactatctataaactcttcaatttccttttcgccagtgttctcatt |
306 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31321750 |
aagtatacaaattccaattctcacctggccacaatgctccttccattggataaacactatctataaactcttcaatttccttttcgccagtgttctcatt |
31321651 |
T |
|
| Q |
307 |
acacttaattctctgaccatcacttctctgtgctcct |
343 |
Q |
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| T |
31321650 |
acacttaattctctgaccatcacttctgtgtgttcct |
31321614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 7 - 343
Target Start/End: Complemental strand, 31334203 - 31333867
Alignment:
| Q |
7 |
tcgaagaatatctacaatcctatttgaaatacaaaatgcagttgattgaatagtaatcataggattaacaccaacagcagttggaagaacactagcatca |
106 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31334203 |
tcgaagaaaatctacaatcctatttgaaatacaaaatgcagttgattgaatagtgatcataggattaacaccaacagcagttggaagaacactagcatca |
31334104 |
T |
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| Q |
107 |
caaacaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattttgcaacttcccatttgatgagcag |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| |
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| T |
31334103 |
caaacaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagcag |
31334004 |
T |
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| Q |
207 |
aagtatacaaattccaattctcacctggcgacaatgctccttccattggataaacactatctataaactcttcaatttccttttcgccagtgttctcatt |
306 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||| |
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| T |
31334003 |
aagtatacaaattccaattctcacctggccacaatgctccttccattggataaacactatctataaactcttcaatttccttctcactggtgttctcatt |
31333904 |
T |
|
| Q |
307 |
acacttaattctctgaccatcacttctctgtgctcct |
343 |
Q |
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| T |
31333903 |
acacttaattctctgaccaccacttctgtgtgttcct |
31333867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 50 - 208
Target Start/End: Complemental strand, 39110562 - 39110404
Alignment:
| Q |
50 |
gattgaatagtaatcataggattaacaccaacagcagttggaagaacactagcatcacaaacaaacaacccttcagcttcccaactctcaccattttcat |
149 |
Q |
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|||||||| || | |||||| ||||||||||| ||| | || | |||||| ||||||| ||| ||||||||| ||||||||||| || ||||| |||| |
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| T |
39110562 |
gattgaatggttaccatagggttaacaccaactgcactaggcaaaacacttccatcacacacatacaacccttttgcttcccaactttctccattctcat |
39110463 |
T |
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| Q |
150 |
caacagcaccttccttttcattcactcccattttgcaacttcccatttgatgagcagaa |
208 |
Q |
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| T |
39110462 |
caactgcaccctcttcttcattcttacccattctacaacttcccatttgatgtgcagaa |
39110404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 10926339 - 10926283
Alignment:
| Q |
26 |
ctatttgaaatacaaaatgcagttgattgaatagtaatcataggattaacaccaaca |
82 |
Q |
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||||||||||||||||||||||||||||||||||| || | ||||||||||| |||| |
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| T |
10926339 |
ctatttgaaatacaaaatgcagttgattgaatagttattagaggattaacactaaca |
10926283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 223
Target Start/End: Original strand, 33521062 - 33521232
Alignment:
| Q |
53 |
tgaatagtaatcataggattaacaccaacagcagttggaagaacactagcatcacaaacaaacaacccttcagcttcccaactctcaccattttcatcaa |
152 |
Q |
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|||||||| ||||| ||||| | ||| | |||||||||| | ||| |||||||| ||||| | ||||||||||||||| ||| ||||||||||||| |
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| T |
33521062 |
tgaatagttatcatgggattgatacctatggcagttggaaacaaacttgcatcacacacaaatagtccttcagcttcccaattctgtccattttcatcaa |
33521161 |
T |
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| Q |
153 |
cagcaccttccttttcattcactcccattttgcaacttcccatttgatgagcagaagtatacaaattccaa |
223 |
Q |
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| T |
33521162 |
ccgtgccttccttatcagtgattcctatcctacaactccccatctggtgagcagatgcatacatattccaa |
33521232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 343
Target Start/End: Original strand, 2010 - 2057
Alignment:
| Q |
296 |
gtgttctcattacacttaattctctgaccatcacttctctgtgctcct |
343 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||| |||| |
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| T |
2010 |
gtgttctcattacacttaattctctgaccaccacttctgtgtgttcct |
2057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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