View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_41 (Length: 337)
Name: NF2125_low_41
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 2 - 321
Target Start/End: Complemental strand, 3292068 - 3291748
Alignment:
| Q |
2 |
ggagttggagggtgaaaaagagctatgcagtcattgttgtgttgtgcaactctcatcaccttaattgattgagagtactacaaggaagaagnnnnnnnn- |
100 |
Q |
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| T |
3292068 |
ggagttggagggtgaaaaagagctatgtagtcattgttgtgttgtgcaactctcatcaccttaattgattgagagtactacaaggaagaagaaaaaaaaa |
3291969 |
T |
|
| Q |
101 |
cataacgatgtatgtttaattatagattatatgatatgttttatgttgtgatcaatgcatgacatttttgtttagataatatcaacttttcaagtaaatt |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3291968 |
cagaacgatgtatgtttaattatagattatatgatatattttatgttgtgatcaatgcatgacatttttgtttagataatatcaacttttcaagtaaatt |
3291869 |
T |
|
| Q |
201 |
cagtgaaacaaggttatatcttacactaatagataataaaccattctaactgacattaaaactgactaacaaactaatcaggtggttaataacaaataaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3291868 |
cagtgaaacaaggttatatcttacactaatagataataaaccactctaactgacattaaaactgactaacaaactaatcaggtggttaataacaaataaa |
3291769 |
T |
|
| Q |
301 |
cttctaataagataaacaaac |
321 |
Q |
| |
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||||||||||||||||||||| |
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| T |
3291768 |
cttctaataagataaacaaac |
3291748 |
T |
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