View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2125_low_42 (Length: 337)

Name: NF2125_low_42
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2125_low_42
NF2125_low_42
[»] chr4 (5 HSPs)
chr4 (8-179)||(25062113-25062300)
chr4 (227-323)||(25062348-25062444)
chr4 (232-300)||(20512800-20512868)
chr4 (233-320)||(22050732-22050816)
chr4 (230-321)||(55897583-55897675)
[»] chr2 (5 HSPs)
chr2 (233-323)||(16576283-16576373)
chr2 (233-323)||(28282685-28282775)
chr2 (236-306)||(17606595-17606665)
chr2 (233-323)||(38576887-38576977)
chr2 (231-268)||(2909855-2909892)
[»] chr5 (6 HSPs)
chr5 (239-316)||(17739907-17739984)
chr5 (231-320)||(40483714-40483803)
chr5 (233-323)||(2243266-2243356)
chr5 (233-295)||(26105473-26105535)
chr5 (233-299)||(40483885-40483951)
chr5 (231-279)||(5205532-5205580)
[»] chr8 (7 HSPs)
chr8 (233-323)||(6630332-6630422)
chr8 (231-323)||(6803892-6803984)
chr8 (243-323)||(29093581-29093661)
chr8 (233-323)||(29969132-29969223)
chr8 (233-284)||(12736089-12736140)
chr8 (231-317)||(37010301-37010387)
chr8 (234-295)||(7405536-7405597)
[»] chr7 (3 HSPs)
chr7 (233-323)||(44754946-44755036)
chr7 (233-320)||(23944111-23944198)
chr7 (249-313)||(757902-757966)
[»] scaffold0136 (1 HSPs)
scaffold0136 (234-323)||(36923-37012)
[»] chr3 (3 HSPs)
chr3 (237-313)||(20519256-20519332)
chr3 (235-323)||(46303407-46303493)
chr3 (231-279)||(20519458-20519506)
[»] chr6 (1 HSPs)
chr6 (233-323)||(32047209-32047299)
[»] chr1 (6 HSPs)
chr1 (240-323)||(49897912-49897995)
chr1 (233-279)||(68132-68178)
chr1 (233-295)||(52432696-52432758)
chr1 (233-306)||(10775052-10775125)
chr1 (262-323)||(41148586-41148647)
chr1 (231-283)||(34601600-34601651)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 25062113 - 25062300
Alignment:
Q  8 taggacacatttgtcaaaccattgtacaaaaataaggaaaaatctgaaaatatttgtgacttttgttgcccggca------------------gctcgtg 89  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||                  |||||||    
T  25062113 taggacacatttgtcaaaccattgtacaaaaatacggaaaaatctgaaaatatttgtgacttttgttgcccggcagctcaacaacacttacatgctcgtg 25062212  T
Q  90 ttcgtgtatgttatgatgacacaaaacttgnnnnnnnnnnctacattaccctttactgatttgggggtaatttacccatatcaaagaaaa 179  Q
    ||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25062213 ttcgtgtatgttatgatgacacaaaacttg--ttttttttctacattaccctttactgatttgggggtaatttacccatatcaaagaaaa 25062300  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 227 - 323
Target Start/End: Original strand, 25062348 - 25062444
Alignment:
Q  227 cttcaaaacatcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaatcctacttattattaggggtaaatt 323  Q
    ||||| |||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25062348 cttcagaacatcaaacttcttcatctgcttcattaaacatgtgatcttcatctcctttgttccataatcaaatcctacttgttattaggggtaaatt 25062444  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 20512868 - 20512800
Alignment:
Q  232 aaacatcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaatc 300  Q
    ||||||||||||||||||||| ||||||| ||||||| || ||||| ||||| ||| ||||||| ||||    
T  20512868 aaacatcaaacttcttcatcttcttcatttaacatgtaatctccatatccttcgtttcataatcgaatc 20512800  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 320
Target Start/End: Original strand, 22050732 - 22050816
Alignment:
Q  233 aacatcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaatcctacttattattaggggtaa 320  Q
    |||||||||||||||||| | ||||||| |||||||||| ||||   |||||||| ||||||| |||| || || ||||| |||||||    
T  22050732 aacatcaaacttcttcatttccttcatttaacatgtgatctcca---cctttgtttcataatcgaatcatatttgttattgggggtaa 22050816  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 321
Target Start/End: Original strand, 55897583 - 55897675
Alignment:
Q  230 caaaacatcaaacttcttcatctacttcattaaacatgtgatatccatctccttt-gttccataatcaaatcctacttattattaggggtaaa 321  Q
    |||||||||||||||||| ||||  |||||| ||||| |||| | |||||| ||| |||||| ||| |||| |||||| |||||| |||||||    
T  55897583 caaaacatcaaacttctttatcttattcattcaacatatgatcttcatctcttttcgttccaaaattaaattctacttgttattaagggtaaa 55897675  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 16576283 - 16576373
Alignment:
Q  233 aacatcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaatcctacttattattaggggtaaatt 323  Q
    |||||||||||||||||||| ||||||| |||||||||| ||| |||| || |||||| |||| |||| ||||||| ||||||||||||||    
T  16576283 aacatcaaacttcttcatctccttcattcaacatgtgatctccttctcattcgttccagaatcgaatcatacttatcattaggggtaaatt 16576373  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 28282685 - 28282775
Alignment:
Q  233 aacatcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaatcctacttattattaggggtaaatt 323  Q
    ||||||||||||||| |||| ||||||| || ||||||| |||||||| || |||||||||||||||  ||||| ||||||||||||||||    
T  28282685 aacatcaaacttctttatctgcttcattcaatatgtgatctccatctcattcgttccataatcaaattttacttgttattaggggtaaatt 28282775  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 306
Target Start/End: Complemental strand, 17606665 - 17606595
Alignment:
Q  236 atcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaatcctactt 306  Q
    ||||||||| ||||||| ||||||| ||||||||||||||||||| || |||| | |||||||||||||||    
T  17606665 atcaaacttgttcatctccttcattcaacatgtgatatccatctcattcgttcaagaatcaaatcctactt 17606595  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 323
Target Start/End: Complemental strand, 38576977 - 38576887
Alignment:
Q  233 aacatcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaatcctacttattattaggggtaaatt 323  Q
    ||||| ||| ||||||||||  |||||| |||||||||| |||||||| || || ||||||||||||| || || | |||||| |||||||    
T  38576977 aacattaaagttcttcatctctttcattcaacatgtgatttccatctctttcgtaccataatcaaatcatatttgtcattaggagtaaatt 38576887  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 2909855 - 2909892
Alignment:
Q  231 aaaacatcaaacttcttcatctacttcattaaacatgt 268  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  2909855 aaaacatcaaacttcttcatctccttcattcaacatgt 2909892  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 239 - 316
Target Start/End: Original strand, 17739907 - 17739984
Alignment:
Q  239 aaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaatcctacttattattaggg 316  Q
    |||||||||||||| ||||||| |||||||||| | ||||||||| |||||| |||| ||||||||||||||||||||    
T  17739907 aaacttcttcatcttcttcatttaacatgtgattttcatctccttcgttccagaatcgaatcctacttattattaggg 17739984  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 320
Target Start/End: Original strand, 40483714 - 40483803
Alignment:
Q  231 aaaacatcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaatcctacttattattaggggtaa 320  Q
    ||||||||||||||||||||||   ||||| |||||||||| | |||||| || |||||| |||| |||| ||||||| ||| |||||||    
T  40483714 aaaacatcaaacttcttcatctcactcattcaacatgtgatcttcatctcattcgttccaaaatcgaatcatacttatcattgggggtaa 40483803  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 323
Target Start/End: Complemental strand, 2243356 - 2243266
Alignment:
Q  233 aacatcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaatcctacttattattaggggtaaatt 323  Q
    |||||||||||||||||| | ||||||| |||||||||| ||||||| ||| |||| | |||| |||  ||||| | ||||| ||||||||    
T  2243356 aacatcaaacttcttcatatccttcattcaacatgtgatctccatcttcttcgttctagaatcgaattttacttgtcattagaggtaaatt 2243266  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 26105535 - 26105473
Alignment:
Q  233 aacatcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatc 295  Q
    |||||||||||||| ||||| |||||||  ||||||||| ||||| |  ||||||||||||||    
T  26105535 aacatcaaacttctccatctccttcatttcacatgtgatctccattttttttgttccataatc 26105473  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 299
Target Start/End: Original strand, 40483885 - 40483951
Alignment:
Q  233 aacatcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaat 299  Q
    |||||| ||||||||||||| ||| | | |||||||||| |||||||| || |||| ||||||||||    
T  40483885 aacatccaacttcttcatcttctttactcaacatgtgatctccatctcattcgttctataatcaaat 40483951  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 5205580 - 5205532
Alignment:
Q  231 aaaacatcaaacttcttcatctacttcattaaacatgtgatatccatct 279  Q
    |||||||||||||| || |||| ||| |||||||||||||| |||||||    
T  5205580 aaaacatcaaacttttttatctcctttattaaacatgtgatctccatct 5205532  T

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Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 233 - 323
Target Start/End: Complemental strand, 6630422 - 6630332
Alignment:
Q  233 aacatcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaatcctacttattattaggggtaaatt 323  Q
    |||||||||||| |||||||  |||||| |||||||| |||||||||||||  || || ||||||||||||||| | ||||||||||||||    
T  6630422 aacatcaaactttttcatctttttcattcaacatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaatt 6630332  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 231 - 323
Target Start/End: Complemental strand, 6803984 - 6803892
Alignment:
Q  231 aaaacatcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaatcctacttattattaggggtaaatt 323  Q
    ||||||||||||||||| ||||  |||||| | |||||| |||||||||||||  || || ||||||||||||||| | ||||||||||||||    
T  6803984 aaaacatcaaacttctttatctttttcattcaccatgtgttatccatctccttcatttcaaaatcaaatcctacttgtcattaggggtaaatt 6803892  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 323
Target Start/End: Original strand, 29093581 - 29093661
Alignment:
Q  243 ttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaatcctacttattattaggggtaaatt 323  Q
    |||||||||| ||||||| |||||||||| |||||||| || |||||||||||||||| |||||  ||||  |||||||||    
T  29093581 ttcttcatctccttcattcaacatgtgatctccatctctttcgttccataatcaaatcatacttggtattgagggtaaatt 29093661  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 29969132 - 29969223
Alignment:
Q  233 aacatcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaatcctacttattatt-aggggtaaatt 323  Q
    |||||||||||||||| ||  ||||||| |||||||||||| |||||| || ||||||||||| ||| |||||| | ||| |||||||||||    
T  29969132 aacatcaaacttcttcttccccttcattcaacatgtgatattcatctctttcgttccataatcgaattctacttgtcattaaggggtaaatt 29969223  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 12736089 - 12736140
Alignment:
Q  233 aacatcaaacttcttcatctacttcattaaacatgtgatatccatctccttt 284  Q
    |||||||||||||||||||| |||| || |||||||||| ||||||||||||    
T  12736089 aacatcaaacttcttcatctccttcgttcaacatgtgatgtccatctccttt 12736140  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 317
Target Start/End: Complemental strand, 37010387 - 37010301
Alignment:
Q  231 aaaacatcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaatcctacttattattagggg 317  Q
    |||||||||||||| ||||| |  |||||| |||||||||| || ||||||||  |||||||||| |||| || || ||||||||||    
T  37010387 aaaacatcaaacttattcatttctttcatttaacatgtgatctctatctccttcattccataatcgaatcatatttgttattagggg 37010301  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 7405597 - 7405536
Alignment:
Q  234 acatcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatc 295  Q
    ||||||||| ||||||||| || |||| |||||||||| | |||||| || |||||||||||    
T  7405597 acatcaaacgtcttcatctcctacattcaacatgtgatcttcatctcgttcgttccataatc 7405536  T

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Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 44754946 - 44755036
Alignment:
Q  233 aacatcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaatcctacttattattaggggtaaatt 323  Q
    |||||||||||||||| | || |||||| |||||||||| | ||||||||||| ||||||||| ||| |  ||||||||||||||||||||    
T  44754946 aacatcaaacttcttcctttatttcattcaacatgtgatcttcatctcctttgatccataatcgaattcggcttattattaggggtaaatt 44755036  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 320
Target Start/End: Original strand, 23944111 - 23944198
Alignment:
Q  233 aacatcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaatcctacttattattaggggtaa 320  Q
    |||||||||||||||| |||  |||||| |||||||||| |||||||||||| ||||| |||| |||| ||||||| || ||||||||    
T  23944111 aacatcaaacttcttcttctctttcattcaacatgtgatttccatctcctttattccagaatcgaatcatacttatcatcaggggtaa 23944198  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 757966 - 757902
Alignment:
Q  249 atctacttcattaaacatgtgatatccatctcctttgttccataatcaaatcctacttattatta 313  Q
    |||| ||||||| |||||||||| | |||||||||  ||| |||||  |||||||||||||||||    
T  757966 atctccttcattcaacatgtgatcttcatctccttcattctataattgaatcctacttattatta 757902  T

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Target: scaffold0136 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 37012 - 36923
Alignment:
Q  234 acatcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaatcctacttattattaggggtaaatt 323  Q
    |||||||| ||||||||||  || ||| |||||||||| | |||||| |||||| ||||||| ||||||||||||||||| | |||||||    
T  37012 acatcaaatttcttcatctcgtttattcaacatgtgatcttcatctcatttgtttcataatcgaatcctacttattattatgtgtaaatt 36923  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 20519332 - 20519256
Alignment:
Q  237 tcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaatcctacttattatta 313  Q
    ||||| ||||||||||  ||||||||||||||||| |||||||||||||||||| |||  ||||| |||||| ||||    
T  20519332 tcaaatttcttcatctctttcattaaacatgtgatctccatctcctttgttccaaaatttaatccaacttatcatta 20519256  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 323
Target Start/End: Original strand, 46303407 - 46303493
Alignment:
Q  235 catcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaatcctacttattattaggggtaaatt 323  Q
    |||||||||||||||||| ||| ||| |||||||||| ||||| | |||||||| |||||  |||||||||| | ||| ||||||||||    
T  46303407 catcaaacttcttcatcttctttattcaacatgtgatctccat-ttctttgttctataattgaatcctacttgtcatt-ggggtaaatt 46303493  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 20519506 - 20519458
Alignment:
Q  231 aaaacatcaaacttcttcatctacttcattaaacatgtgatatccatct 279  Q
    |||||||||||||| ||||| | ||||||| ||| ||||||||||||||    
T  20519506 aaaacatcaaactttttcattttcttcattcaacgtgtgatatccatct 20519458  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 32047209 - 32047299
Alignment:
Q  233 aacatcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaatcctacttattattaggggtaaatt 323  Q
    ||||||||||||||||||||  |||||| ||||| |||||| | ||| |||  |||||||||  |||||||||||| ||||| ||||||||    
T  32047209 aacatcaaacttcttcatctcattcattcaacatatgatattcgtcttcttcattccataattgaatcctacttatcattagaggtaaatt 32047299  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 323
Target Start/End: Original strand, 49897912 - 49897995
Alignment:
Q  240 aacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaatcctacttattattaggggtaaatt 323  Q
    ||||||||| ||| ||||||| |||||||||| |||||||||||||||| | |||| |||| || || | ||||| ||||||||    
T  49897912 aacttcttcttctccttcattcaacatgtgatctccatctcctttgttctagaatcgaatcataattgtcattagaggtaaatt 49897995  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 68132 - 68178
Alignment:
Q  233 aacatcaaacttcttcatctacttcattaaacatgtgatatccatct 279  Q
    |||||| ||||||||||||| ||||||| |||||||||| |||||||    
T  68132 aacatctaacttcttcatctccttcatttaacatgtgatctccatct 68178  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 52432696 - 52432758
Alignment:
Q  233 aacatcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatc 295  Q
    ||||| |||||||||||||| ||||||| |||| ||||| |||||||  ||||||| ||||||    
T  52432696 aacattaaacttcttcatctccttcatttaacaagtgatctccatctaatttgttctataatc 52432758  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 306
Target Start/End: Original strand, 10775052 - 10775125
Alignment:
Q  233 aacatcaaacttcttcatctacttcattaaacatgtgatatccatctcctttgttccataatcaaatcctactt 306  Q
    ||||||||| |||||| |||  |||||| |||||||||| | ||| | ||| ||||||||||| ||||||||||    
T  10775052 aacatcaaatttcttcgtctgtttcattcaacatgtgatcttcattttcttcgttccataatcgaatcctactt 10775125  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 323
Target Start/End: Complemental strand, 41148647 - 41148586
Alignment:
Q  262 aacatgtgatatccatctcctttgttccataatcaaatcctacttattattaggggtaaatt 323  Q
    |||||||||||||||||||||| |||| | |||| ||| |||||| | ||||||| ||||||    
T  41148647 aacatgtgatatccatctccttcgttctagaatcgaattctacttttcattagggataaatt 41148586  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 34601651 - 34601600
Alignment:
Q  231 aaaacatcaaacttcttcatctacttcattaaacatgtgatatccatctcctt 283  Q
    |||||||||||| | ||||||||||| ||| |||||||||||| |||||||||    
T  34601651 aaaacatcaaacgttttcatctactt-attcaacatgtgatattcatctcctt 34601600  T

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