View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2125_low_47 (Length: 320)

Name: NF2125_low_47
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2125_low_47
NF2125_low_47
[»] chr5 (8 HSPs)
chr5 (1-272)||(37892122-37892393)
chr5 (1-272)||(37187271-37187542)
chr5 (271-304)||(10331969-10332002)
chr5 (271-304)||(37887685-37887718)
chr5 (271-304)||(4146120-4146153)
chr5 (271-304)||(6815513-6815546)
chr5 (271-304)||(17235149-17235182)
chr5 (271-304)||(25693914-25693947)
[»] scaffold2010 (1 HSPs)
scaffold2010 (271-304)||(506-539)
[»] chr8 (7 HSPs)
chr8 (271-304)||(44807342-44807375)
chr8 (271-304)||(7658615-7658648)
chr8 (271-304)||(17075021-17075054)
chr8 (271-304)||(17573216-17573249)
chr8 (271-304)||(23623434-23623467)
chr8 (271-304)||(31947867-31947900)
chr8 (271-304)||(32498391-32498424)
[»] chr2 (9 HSPs)
chr2 (271-304)||(11188319-11188352)
chr2 (271-304)||(21024728-21024761)
chr2 (271-304)||(2755217-2755250)
chr2 (271-304)||(31025888-31025921)
chr2 (271-304)||(32661417-32661450)
chr2 (271-304)||(34922237-34922270)
chr2 (271-304)||(40938807-40938840)
chr2 (271-304)||(41454525-41454558)
chr2 (271-303)||(41454809-41454841)
[»] chr1 (5 HSPs)
chr1 (271-304)||(1712383-1712416)
chr1 (271-304)||(26811466-26811499)
chr1 (271-304)||(7159520-7159553)
chr1 (271-304)||(15911685-15911718)
chr1 (271-304)||(15911970-15912003)
[»] scaffold0032 (1 HSPs)
scaffold0032 (271-304)||(47805-47838)
[»] chr7 (5 HSPs)
chr7 (271-304)||(11742925-11742958)
chr7 (271-304)||(21954342-21954375)
chr7 (271-304)||(36204449-36204482)
chr7 (271-304)||(40348359-40348392)
chr7 (271-304)||(45480096-45480129)
[»] chr6 (4 HSPs)
chr6 (271-304)||(4037051-4037084)
chr6 (271-304)||(8160612-8160645)
chr6 (271-304)||(24897104-24897137)
chr6 (271-304)||(31175833-31175866)
[»] chr4 (11 HSPs)
chr4 (271-304)||(9592398-9592431)
chr4 (271-304)||(12892837-12892870)
chr4 (271-304)||(13306920-13306953)
chr4 (271-304)||(18961857-18961890)
chr4 (271-304)||(23777331-23777364)
chr4 (271-304)||(29860665-29860698)
chr4 (271-304)||(36945526-36945559)
chr4 (271-304)||(44121055-44121088)
chr4 (271-304)||(49869686-49869719)
chr4 (271-304)||(51239998-51240031)
chr4 (272-304)||(24296768-24296800)
[»] chr3 (2 HSPs)
chr3 (271-304)||(46934052-46934085)
chr3 (271-304)||(47284559-47284592)


Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 37892393 - 37892122
Alignment:
Q  1 cttccacaacagtatgtatggcataagtggataccatttcagggaaaaataacaaaagatcaatcaatttcaatatattactcttatatcttaagttgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37892393 cttccacaacagtatgtatggcataagtggataccatttcagggaaaaataacaaaagatcaatcaatttcaatatattactcttatatcttaagttgca 37892294  T
Q  101 tacacagttaaaaggcacagtaacactacaagctcaacttttgaattcgattttgagataacatgctataactttacctcttccgtgctttcctttttct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37892293 tacacagttaaaaggcacagtaacactacaagctcaacttttgaattcgattttgagacaacatgctataactttacctcttccgtgctttcctttttct 37892194  T
Q  201 agactctgtcttttgaaatttctttctagaaacaaatttactcttcggtttcagttttaactcaggtgagaa 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37892193 agactctgtcttttgaaatttctttctagaaacaaatttactcttcggtttcagttttaactcaggtgagaa 37892122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 37187542 - 37187271
Alignment:
Q  1 cttccacaacagtatgtatggcataagtggataccatttcagggaaaaataacaaaagatcaatcaatttcaatatattactcttatatcttaagttgca 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||    
T  37187542 cttccataacagtatgtatggcataagtggataccatttcagggaaaaataacaaaagaccaatcaatttcaatatattactcttatacattaagttgca 37187443  T
Q  101 tacacagttaaaaggcacagtaacactacaagctcaacttttgaattcgattttgagataacatgctataactttacctcttccgtgctttcctttttct 200  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| |||||||||||| ||||    
T  37187442 tacacagttaaaaggcacagtaacattacaagctcaacttctgaattcgattttgagacaacaggctataactttacctctttcgtgctttccttcttct 37187343  T
Q  201 agactctgtcttttgaaatttctttctagaaacaaatttactcttcggtttcagttttaactcaggtgagaa 272  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37187342 agactccgtcttttgaaatttctttctagaaacaaatttactctttggtttcagttttaactcaggtgagaa 37187271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 10332002 - 10331969
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    ||||||||||||||||||||||||||||||||||    
T  10332002 aaatcgcaacttttgaaaagatagggggtcaaaa 10331969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 37887718 - 37887685
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    ||||||||||||||||||||||||||||||||||    
T  37887718 aaatcgcaacttttgaaaagatagggggtcaaaa 37887685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 4146153 - 4146120
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  4146153 aaatcgcaacttttgaaaagatagggggccaaaa 4146120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 6815546 - 6815513
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  6815546 aaatcgcaacttttgaaaagatagggggccaaaa 6815513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 17235182 - 17235149
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  17235182 aaatcgcaacttttgaaaagatagggggccaaaa 17235149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 25693947 - 25693914
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  25693947 aaatcgcaacttttgaaaagatagggggccaaaa 25693914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2010 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold2010
Description:

Target: scaffold2010; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 539 - 506
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    ||||||||||||||||||||||||||||||||||    
T  539 aaatcgcaacttttgaaaagatagggggtcaaaa 506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 44807342 - 44807375
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    ||||||||||||||||||||||||||||||||||    
T  44807342 aaatcgcaacttttgaaaagatagggggtcaaaa 44807375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 7658648 - 7658615
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    ||||| ||||||||||||||||||||||||||||    
T  7658648 aaatcacaacttttgaaaagatagggggtcaaaa 7658615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 17075021 - 17075054
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||| |||||||||||||||||||    
T  17075021 aaatcgcaacttttaaaaagatagggggtcaaaa 17075054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 17573249 - 17573216
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||| |||||||||||||||||||    
T  17573249 aaatcgcaacttttaaaaagatagggggtcaaaa 17573216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 23623467 - 23623434
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    ||||||||||||||||||||||| ||||||||||    
T  23623467 aaatcgcaacttttgaaaagatatggggtcaaaa 23623434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 31947900 - 31947867
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  31947900 aaatcgcaacttttgaaaagatagggggccaaaa 31947867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 32498424 - 32498391
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  32498424 aaatcgcaacttttgaaaagatagggggccaaaa 32498391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 11188352 - 11188319
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    ||||||||||||||||||||||||||||||||||    
T  11188352 aaatcgcaacttttgaaaagatagggggtcaaaa 11188319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 21024728 - 21024761
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    ||||||||||||||||||||||||||||||||||    
T  21024728 aaatcgcaacttttgaaaagatagggggtcaaaa 21024761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 2755217 - 2755250
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  2755217 aaatcgcaacttttgaaaagatagggggccaaaa 2755250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 31025921 - 31025888
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  31025921 aaatcgcaacttttgaaaagatagggggccaaaa 31025888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 32661450 - 32661417
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  32661450 aaatcgcaacttttgaaaagatagggggccaaaa 32661417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 34922270 - 34922237
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  34922270 aaatcgcaacttttgaaaagatagggggccaaaa 34922237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 40938840 - 40938807
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    ||||| ||||||||||||||||||||||||||||    
T  40938840 aaatcacaacttttgaaaagatagggggtcaaaa 40938807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 41454558 - 41454525
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  41454558 aaatcgcaacttttgaaaagatagggggccaaaa 41454525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 303
Target Start/End: Original strand, 41454809 - 41454841
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaa 303  Q
    |||||||||||||||||||||||||||| ||||    
T  41454809 aaatcgcaacttttgaaaagatagggggccaaa 41454841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 1712416 - 1712383
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    ||||||||||||||||||||||||||||||||||    
T  1712416 aaatcgcaacttttgaaaagatagggggtcaaaa 1712383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 26811499 - 26811466
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    ||||||||||||||||||||||||||||||||||    
T  26811499 aaatcgcaacttttgaaaagatagggggtcaaaa 26811466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 7159553 - 7159520
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    ||||||||||||||| ||||||||||||||||||    
T  7159553 aaatcgcaacttttggaaagatagggggtcaaaa 7159520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 15911718 - 15911685
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  15911718 aaatcgcaacttttgaaaagatagggggccaaaa 15911685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 15911970 - 15912003
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    ||||||||||||||||||| ||||||||||||||    
T  15911970 aaatcgcaacttttgaaaaaatagggggtcaaaa 15912003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 47805 - 47838
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    ||||||||||||||||||||||| ||||||||||    
T  47805 aaatcgcaacttttgaaaagataaggggtcaaaa 47838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 11742925 - 11742958
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  11742925 aaatcgcaacttttgaaaagatagggggccaaaa 11742958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 21954342 - 21954375
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    ||||||||||||||| ||||||||||||||||||    
T  21954342 aaatcgcaacttttggaaagatagggggtcaaaa 21954375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 36204449 - 36204482
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  36204449 aaatcgcaacttttgaaaagatagggggccaaaa 36204482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 40348392 - 40348359
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  40348392 aaatcgcaacttttgaaaagatagggggccaaaa 40348359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 45480096 - 45480129
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  45480096 aaatcgcaacttttgaaaagatagggggccaaaa 45480129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 4037084 - 4037051
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  4037084 aaatcgcaacttttgaaaagatagggggccaaaa 4037051  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 8160645 - 8160612
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    ||||||||||||||||||||||||||| ||||||    
T  8160645 aaatcgcaacttttgaaaagataggggatcaaaa 8160612  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 24897137 - 24897104
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    ||||||||||||||||||||||||| ||||||||    
T  24897137 aaatcgcaacttttgaaaagataggaggtcaaaa 24897104  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 31175833 - 31175866
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    ||||||||||||||||||||||||||||| ||||    
T  31175833 aaatcgcaacttttgaaaagatagggggttaaaa 31175866  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 9592398 - 9592431
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  9592398 aaatcgcaacttttgaaaagatagggggccaaaa 9592431  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 12892870 - 12892837
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  12892870 aaatcgcaacttttgaaaagatagggggccaaaa 12892837  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 13306920 - 13306953
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  13306920 aaatcgcaacttttgaaaagatagggggccaaaa 13306953  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 18961890 - 18961857
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  18961890 aaatcgcaacttttgaaaagatagggggccaaaa 18961857  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 23777331 - 23777364
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    ||||||||||||||||||||||| ||||||||||    
T  23777331 aaatcgcaacttttgaaaagataaggggtcaaaa 23777364  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 29860698 - 29860665
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  29860698 aaatcgcaacttttgaaaagatagggggccaaaa 29860665  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 36945559 - 36945526
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  36945559 aaatcgcaacttttgaaaagatagggggccaaaa 36945526  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 44121055 - 44121088
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  44121055 aaatcgcaacttttgaaaagatagggggccaaaa 44121088  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 49869686 - 49869719
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    ||||||||||||||||||||||||| ||||||||    
T  49869686 aaatcgcaacttttgaaaagataggaggtcaaaa 49869719  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 51240031 - 51239998
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    ||||||||| ||||||||||||||||||||||||    
T  51240031 aaatcgcaatttttgaaaagatagggggtcaaaa 51239998  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 304
Target Start/End: Original strand, 24296768 - 24296800
Alignment:
Q  272 aatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||| ||||||||    
T  24296768 aatcgcaacttttgaaaagataggaggtcaaaa 24296800  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Complemental strand, 46934085 - 46934052
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||||||||||||||||| |||||    
T  46934085 aaatcgcaacttttgaaaagatagggggccaaaa 46934052  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 304
Target Start/End: Original strand, 47284559 - 47284592
Alignment:
Q  271 aaatcgcaacttttgaaaagatagggggtcaaaa 304  Q
    |||||||||||||| |||||||||||||||||||    
T  47284559 aaatcgcaacttttaaaaagatagggggtcaaaa 47284592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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