View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_5 (Length: 592)
Name: NF2125_low_5
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 21 - 490
Target Start/End: Original strand, 53323358 - 53323836
Alignment:
| Q |
21 |
ttatgtctactatgttagatgcttctgttatgtttgtttgtaggaatcacaaatgtgatgcccataatttggcctctttggctaagattatgagtgatag |
120 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| || ||||||| |
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| T |
53323358 |
ttatgtctactatgttagatgcttatgttatgtttgtttgtaggaatcacaactgtgatgcccataatttggcttctttggctaggatggtgggtgatag |
53323457 |
T |
|
| Q |
121 |
aacctggcatggagtagctcctaatagctct-------ctgttaattcgggtgctaatgttgtgccttgtactcatgatggctgtgttccagcttttgtt |
213 |
Q |
| |
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||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||| ||||||| |||||||||| |
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| T |
53323458 |
aacctggtatggagtagctcctaatagctctatgttctctgttaattcggctgctaatgtcgtgccttgtactcatgatggttgtgttc-agcttttgtt |
53323556 |
T |
|
| Q |
214 |
taatgaaagttgttttcacttcnnnnnnng-gttggtaatgtaaaggcatattgttaatagagtcatgtgagtggctgcatcaaattataatggtacaca |
312 |
Q |
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| T |
53323557 |
taatgaaagttgttttcacttcaaaaaaaaagttggtaatgtaaagacatattgttaatagactcatgtgagtggccgtatcaaattataatggtacaca |
53323656 |
T |
|
| Q |
313 |
aatcaatactatgaattaag---taccattatttaagtcactaaaatatgaatgatgaattcagtttgatggattgtaaatggctgctacttaatcagag |
409 |
Q |
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|| ||||||||||||||||| ||| |||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| | |
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| T |
53323657 |
aaccaatactatgaattaagtactactattatttaagtcaccaaaatatgaatgatggattcagtttgatgga-tgtaaatggctgctacttaatcagtg |
53323755 |
T |
|
| Q |
410 |
aacaaaggtatagaatgaaaacaaaaggnnnnnnnnntcagagaactcgtttatgacagtcacacatgacttgtttttggc |
490 |
Q |
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| T |
53323756 |
aacaaaggtatataatgaaaagaaaaggaaaaaaaaatcagagaactcatttatgacagtcacacaggacttgtttttggc |
53323836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 514 - 590
Target Start/End: Original strand, 53323836 - 53323913
Alignment:
| Q |
514 |
ccgttatcaaaag-gtcatgatctctaaattgcaagacatgtttatgtactgctaaagtatataacaaatacataaca |
590 |
Q |
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| T |
53323836 |
ccgttatcaaaggtgtcgtgatctctaaattgcaagacatgtttttgtactgctaaagtatataacaaatacataaca |
53323913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 3e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 276 - 590
Target Start/End: Complemental strand, 35052030 - 35051705
Alignment:
| Q |
276 |
tcatgtgagtggctgcatcaaattataatggtacacaaatcaatactatgaattaagtaccattatttaagtcactaaaatatgaatgatgaattcagtt |
375 |
Q |
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||||||||||||| | ||||||||||||||||||||||| | |||||||||||||||| | |||||||||||||| ||||| ||||||| | ||||||| |
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| T |
35052030 |
tcatgtgagtggccgtatcaaattataatggtacacaaaccgatactatgaattaagttctattatttaagtcaccaaaatctgaatgacgggttcagtt |
35051931 |
T |
|
| Q |
376 |
tgatggattgtaaatggctgctacttaatcagagaacaaaggtatagaatgaaaacaaaa---------ggnnnnnnnnntcagagaactcgtttatgac |
466 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||| |||||||| |
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| T |
35051930 |
tgatggattgtaaatggctgctacttaatcagagaacaaaggtatagaatgaaaaaaaaaaaaaaaaaaggaaaaaaaaagcagagaacttatttatgac |
35051831 |
T |
|
| Q |
467 |
agtcacacatgacttgtttttggcatagtcacaacacttggatccctccgttatcaaaag--gtcatgatctctaaattgcaagacatgtttatgtactg |
564 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
35051830 |
agtcacacaggacttgtttttggcatagtcacaacacttagatccctccgttatcaaaaggtgtcatgatctctaaattgcaagacatgtttctgtactg |
35051731 |
T |
|
| Q |
565 |
ctaaagtatataacaaatacataaca |
590 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
35051730 |
ctaaagtatataacaaatacataaca |
35051705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 29945621 - 29945842
Alignment:
| Q |
21 |
ttatgtctactatgttagatgcttctgttatgtttgtttgtaggaatcacaaatgtgatgcccataatttggcctctttggctaagattatgagtgatag |
120 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||| |||| |||||||| ||||||| ||||||||||| ||||||||||||||| || || |||| |
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| T |
29945621 |
ttatgtccactatgttagatgtttctgttatgtttgttagtagaaatcacaatggtgatgctcataatttggcttctttggctaagattgtgggtaatag |
29945720 |
T |
|
| Q |
121 |
aacctggcatggagtagctcctaatagc-------tctctgttaattcgggtgctaatgttgtgccttgtactcatgatggctgtgttccagcttttgtt |
213 |
Q |
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|||||||||||| ||||||||||||||| ||||||| || || || ||||| ||| |||||| |||||||||||||||||||||||| | |
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| T |
29945721 |
aacctggcatggggtagctcctaatagccctctgtcctctgtttttttggctgttaatgccgtgtcttgtaatcatgatggctgtgttccagctttgatc |
29945820 |
T |
|
| Q |
214 |
taatgaaagttgttttcacttc |
235 |
Q |
| |
|
||||| ||| |||||||||||| |
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| T |
29945821 |
taatgcaagctgttttcacttc |
29945842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 609446 - 609382
Alignment:
| Q |
170 |
atgttgtgccttgtactcatgatggctgtgttccagcttttgtttaatgaaagttgttttcactt |
234 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
609446 |
atgttgtgccttgtatcaatgatggctgtgttccaacttttgtttaatgaaagtttgtttcactt |
609382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 235
Target Start/End: Complemental strand, 12984242 - 12984195
Alignment:
| Q |
188 |
atgatggctgtgttccagcttttgtttaatgaaagttgttttcacttc |
235 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
12984242 |
atgatggctgtgttccagctttgttttaatgaaagtttgtttcacttc |
12984195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 30401159 - 30401119
Alignment:
| Q |
188 |
atgatggctgtgttccagcttttgtttaatgaaagttgttt |
228 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30401159 |
atgatggctgtgttccagcttctgtttaatgaaagttgttt |
30401119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 2546783 - 2546823
Alignment:
| Q |
188 |
atgatggctgtgttccagcttttgtttaatgaaagttgttt |
228 |
Q |
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| T |
2546783 |
atgatggctgtgttccaacttttgtttaatgaaagttgttt |
2546823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 15718698 - 15718658
Alignment:
| Q |
188 |
atgatggctgtgttccagcttttgtttaatgaaagttgttt |
228 |
Q |
| |
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||||||||| ||||||||||| | ||||||||||||||||| |
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| T |
15718698 |
atgatggctttgttccagcttctatttaatgaaagttgttt |
15718658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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