View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_50 (Length: 315)
Name: NF2125_low_50
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 51858133 - 51858414
Alignment:
| Q |
20 |
tccttttcatagacttcatattcaagctgctaagtttttgctactcaccgaaaccaaaatatttcgcacacaaccattgttgccaacttcgaaatctagc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51858133 |
tccttttcatagacttcatattcaagctgctaagtttttgctactcaccgaaaccaaaatatttcgcacacaaccattgttgccaacttcgaaatctagc |
51858232 |
T |
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| Q |
120 |
aaacttcgtcacttagatattttgactaacaatcacatctcacacacattcccatctaatgtgttagatttcatgaacttacgagttaaggaaatgtttc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51858233 |
aaacttcgtcacttagatattttgactaacaatcacatctcacacacattcccatctaatgtgttagatttcatgaacttacgagttaaggaaatgtttc |
51858332 |
T |
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| Q |
220 |
aagcacatacactcagtttttctagatatgggcgtggtttaatttcatttgagccccttaatggtgtttataaagtagtgtt |
301 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
51858333 |
aagcacatactctcagtttttctagatatgggcgtggtttaattgcatttgagccccttaatggtgtttataaagtagtgtt |
51858414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 108 - 301
Target Start/End: Complemental strand, 34865268 - 34865075
Alignment:
| Q |
108 |
tcgaaatctagcaaacttcgtcacttagatattttgactaacaatcacatctcacacacattcccatctaatgtgttagatttcatgaacttacgagtta |
207 |
Q |
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||||||||| |||||||||||||||||||| || | ||||||| ||| || |||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
34865268 |
tcgaaatctggcaaacttcgtcacttagatgttgtaactaacactcatatgtcacacactttcccgtctaatgtgttagatttcatgaacttacgagtta |
34865169 |
T |
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| Q |
208 |
aggaaatgtttcaagcacatacactcagtttttctagatatgggcgtggtttaatttcatttgagccccttaatggtgtttataaagtagtgtt |
301 |
Q |
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| T |
34865168 |
tggaattgtttcaagcatatactatcaatttttctagagatggaggtgatttaattgcatttgagcccctttctgatgtttataaagtagtgtt |
34865075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 34865395 - 34865308
Alignment:
| Q |
20 |
tccttttcatagacttcatattcaagctgctaagtttttgctactcaccgaaaccaaaatatttcgcacacaaccattgttgccaact |
107 |
Q |
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||||| ||||| ||||| |||| || || |||||||||||| ||||||||||||||||||||||| ||||||||| || |||||| |
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| T |
34865395 |
tccttctcatacacttcgcattccagatggtaagtttttgcttttcaccgaaaccaaaatatttcgcctacaaccattatttccaact |
34865308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 224
Target Start/End: Original strand, 34145347 - 34145460
Alignment:
| Q |
111 |
aaatctagcaaacttcgtcacttagatattttgactaaca-atcacatctcacacacattcccatctaatgtgttagatttcatgaacttacgagttaag |
209 |
Q |
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|||||| | ||| |||||||||||||| | |||||||||| ||| ||| ||||||||| ||||| || |||||||||||||||||||| ||||| | |
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| T |
34145347 |
aaatctggaaaatttcgtcacttagatgtcttgactaacacatc-cataacacacacatacccattcaacgtgttagatttcatgaacttgcgagtaaga |
34145445 |
T |
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| Q |
210 |
gaaatgtttcaagca |
224 |
Q |
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||| ||||||||||| |
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| T |
34145446 |
gaattgtttcaagca |
34145460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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