View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_52 (Length: 308)
Name: NF2125_low_52
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 50243490 - 50243190
Alignment:
| Q |
1 |
tgaaattgttcccaaagcacgattgaaccctttgttaagggttgcacctaatctcagaaagnnnnnnnngttaactttttcattaaacaaagacatattt |
100 |
Q |
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| T |
50243490 |
tgaaattgttcccaaagcacgattgaaccctttgttaagggttgcacctaatctcagaaagaaaaaaaagttaactttttcattaaacaaagacat--tt |
50243393 |
T |
|
| Q |
101 |
caaaacnnnnnnnnnn---gaaattcacatagtatttcgttgtctgtcacaacaataataataagtaacaactatatcgccccgacacttgagattgaaa |
197 |
Q |
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| T |
50243392 |
caaaaaaaaaaaaaagaaagaaattcacatagtatttcgttgtctgtcacaacaataataataagtaacaactatatcggcccgacacttgagattgaaa |
50243293 |
T |
|
| Q |
198 |
gcatgttcaatgtctaacatgtgtaggtgtatgtgacattggcacaacaccgacatagtcattttatattggtagttgaatagaatagattcctacctat |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50243292 |
acatgttcaatgtctaacatgtgtaggtgtatgtgacattggcacaacaccgacatagtcattttatattggtagttgaatagaatagattcctacctat |
50243193 |
T |
|
| Q |
298 |
gct |
300 |
Q |
| |
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||| |
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| T |
50243192 |
gct |
50243190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 3963719 - 3963755
Alignment:
| Q |
181 |
gacacttgagattgaaagcatgttcaatgtctaacat |
217 |
Q |
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| T |
3963719 |
gacactttagattgaaggcatgttcaatgtctaacat |
3963755 |
T |
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