View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_6 (Length: 536)
Name: NF2125_low_6
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 24 - 518
Target Start/End: Original strand, 9037555 - 9038070
Alignment:
| Q |
24 |
ctcccacccatttcgagcattttatgatggtc----cagagatggccgaagacattttgccaaactaagaaatgtagtaaggacattcaacctctaccaa |
119 |
Q |
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| T |
9037555 |
ctcccacccattttgagcattttatgatggtcgatccagagatggccaaagacattttgccaaactgttaaatgtagtaaggacattcaacctctaccaa |
9037654 |
T |
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| Q |
120 |
cagaattcgttatgcatggattgtggcctgccaacagagttatatctgatccacgtgattgtttagataaaaccaaccaaaagacaatagatattggcaa |
219 |
Q |
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| T |
9037655 |
cagaattcgttatgcatggattgtggcctgctaacagagttatatctgatccacgtggttgtttagataaaaccaaccaaaagacaatagatattggcaa |
9037754 |
T |
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| Q |
220 |
tgtaggtgtatttattttcttcgttcactgtttatcattatttttatatgatttgaaaattaactatttgttttgttttattcaatcagtttccgttgga |
319 |
Q |
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| T |
9037755 |
tgtaggtgtatttattttcttcgttcattgtttatcattatttttatatgatttgaaaattaactttttgttttgttttattcaatcagtttccgttgga |
9037854 |
T |
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| Q |
320 |
cttgaaggaagaacttgataaagtgtggccggatttattagtttatgaaaagtctcgactaataaacattgctttttgggatgatcaatggaaagcgcat |
419 |
Q |
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| T |
9037855 |
cttgaaggaagaacttgataaagtgtggccggatttattagtttatgaaaagtctcgactaataaacattgctttttgggatgagcaatggaaagcgcat |
9037954 |
T |
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| Q |
420 |
ggaacttgctccaatatggatataattga-----------------tttccatttataagaaaatcggttctctaaaggaagtccttgggaaagagggct |
502 |
Q |
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| T |
9037955 |
ggaagttgctccaatatggatataattgatttcttcaagctcagtctttccatttataagaaaatcggttctctaaaggaagtccttgggaaagagggct |
9038054 |
T |
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| Q |
503 |
attcacccggtcctca |
518 |
Q |
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| T |
9038055 |
attcacccggtcctca |
9038070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 225 - 298
Target Start/End: Original strand, 581002 - 581076
Alignment:
| Q |
225 |
gtgtatttattttcttcgttcactgtttatcattatttttatatgatttgaaaa-ttaactatttgttttgtttt |
298 |
Q |
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| T |
581002 |
gtgtatttattttgttcgttagttgtttatcataatttttatatgatttgaaaagttaattttttgttttgtttt |
581076 |
T |
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