View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_61 (Length: 280)
Name: NF2125_low_61
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 5461123 - 5460895
Alignment:
| Q |
18 |
gtgaacatcagtgattacaggttatgtttgaaatggacagtttgaaaaatataaaagagagaagaaattaatatcaatgattagaataatgattagttgt |
117 |
Q |
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| T |
5461123 |
gtgaacatcagtgattacaggttatgtttgaaatggacagtttgaaaaatataaaagagagaagaaattaatatcaatgattagaataatgattagttgt |
5461024 |
T |
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| Q |
118 |
gtcaagttggtcgatcaagaaaagtataaggaagttcacaaggtgagttttggaagcaagcagaagggtttgggtgaacattatttagctgttacttatt |
217 |
Q |
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|||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
5461023 |
gtcaagttggtcaatcaagaaaagtataaggaagttc---------------------aacagaagggtttgggtgaacattatttagctgttacttatt |
5460945 |
T |
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| Q |
218 |
tggactaaatcttcataaacaattattgagcataagctttaagcacaggt |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5460944 |
tggactaaatcttcataaacaattattgagcataagctttaagcacaggt |
5460895 |
T |
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