View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2125_low_62 (Length: 280)
Name: NF2125_low_62
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_62 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 55092092 - 55092356
Alignment:
| Q |
1 |
actccaaaacgacagaggaagacgacgatggcaacttcttcgtcgcgttttggtaaggagaatgtgtctgctgtggatatgcagaattcatcgttttcgc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55092092 |
actccgaaacgacagaggaagacgacgatgacaacttcttcgtcgcgttttggtaaggagaatgtgtctgctgtggatatgcagaattcatcgttttcgc |
55092191 |
T |
|
| Q |
101 |
gtttgaaggattctttgaaggatgtatgtagcttcgatgattttaagctgcggatgagtgtttatttgagtctcggaacttgtgaagatattttccatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55092192 |
gtttgaaggattctttgaaggatgtatgtagcttcgatgattttaagcagcggatgagtgtttatttgagtctcggaacttgtgaagatattttccatgt |
55092291 |
T |
|
| Q |
201 |
catgaatcaagtcactaaggtttgttttctctcttccacatgctttgcttgaaatttgaattatc |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55092292 |
catgaatcaagtcactaaggtttgttttctctcttccacatgctttgcttgaaatttgaattatc |
55092356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University