View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_64 (Length: 268)
Name: NF2125_low_64
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 10075527 - 10075273
Alignment:
| Q |
10 |
aagaaaatcaatctagcaagaaagttcacttgcttcagtatcttcaacttgagagtgaaatacgaagctgggaaatttagttgtgatttgtctgcaaata |
109 |
Q |
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| T |
10075527 |
aagaaaatcaatctagcaagaaagtgcacttgcttcagtatcttcaacttgagagtgaaatacgaagctgggaaatttagttgtgatttctctgcaaata |
10075428 |
T |
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| Q |
110 |
aaacaatttgtacgatgttagattctagagctaggtaacaaaatgctaatcaacgttgaactaacatgtttccaagatgttagattctagagctaggcac |
209 |
Q |
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| T |
10075427 |
aaacaatttgtacgatgttagattctagagctaggtaacaaaatgctaatcaacgttgaactaacatgtttccaagatgttagattctagagctaggcac |
10075328 |
T |
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| Q |
210 |
aagtcttatataaatagcccttaaaatctattaaccaatttagacttgtttaaga |
264 |
Q |
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| T |
10075327 |
aagtcttatataaatagcccttaaaatctattatccaatttagacttgtttaaga |
10075273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 10259902 - 10259813
Alignment:
| Q |
13 |
aaaatcaatctagcaagaaagttcacttgcttca----gtatcttcaacttgagagtgaaatacgaagctgggaaatttagttgtgattt |
98 |
Q |
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| T |
10259902 |
aaaatcaatctagcaagagaatgcagttgcttcattaggtatcttcaacttgagagtgaaatacgaaactaggaaatgtagttgtgattt |
10259813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 10262050 - 10262140
Alignment:
| Q |
13 |
aaaatcaatctagcaagaaagttcacttgcttc----agtatcttcaacttgagagtgaaatacgaagctgggaaatttagttgtgatttg |
99 |
Q |
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| T |
10262050 |
aaaaacaatctagcaagaaaatgcatttgcttcggtacgtatcttcaacttgagagtgaaatacgaaacttggaaatgtagttgtgatttg |
10262140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 160
Target Start/End: Complemental strand, 10033021 - 10032915
Alignment:
| Q |
53 |
tcaacttgagagtgaaatacgaagctgggaaatttagttgtgatttgtctgcaaataaaacaatttgtacgatgttagattctagagctaggtaacaaaa |
152 |
Q |
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| T |
10033021 |
tcaacttgagtatggaatatgaaactaggaaatgtggttgtgatttctctgcaaacaaa-caatttgagagatgttagattgtaaagcttggtaacaaaa |
10032923 |
T |
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| Q |
153 |
tgctaatc |
160 |
Q |
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| T |
10032922 |
tgctaatc |
10032915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 160
Target Start/End: Complemental strand, 10054933 - 10054827
Alignment:
| Q |
53 |
tcaacttgagagtgaaatacgaagctgggaaatttagttgtgatttgtctgcaaataaaacaatttgtacgatgttagattctagagctaggtaacaaaa |
152 |
Q |
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| T |
10054933 |
tcaacttgagtatggaatatgaaactaggaaatgtggttgtgatttctctgcaaacaaa-caatttgagagatgttagattgtaaagcttggtaacaaaa |
10054835 |
T |
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| Q |
153 |
tgctaatc |
160 |
Q |
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|||||||| |
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| T |
10054834 |
tgctaatc |
10054827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 10064855 - 10064791
Alignment:
| Q |
48 |
tatcttcaacttgagagtgaaatacgaagctgggaaatttagttgtgatttgtctgcaaataaaa |
112 |
Q |
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| T |
10064855 |
tatcatcaacttgcgtgtgaaatatgaaactgggaaatgcagttgtgatttctctgcaaaaaaaa |
10064791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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