View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_65 (Length: 263)
Name: NF2125_low_65
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_65 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 3312611 - 3312360
Alignment:
| Q |
1 |
ataagatctaagagagtatccttatcaatctcatcttttgatgtaaaatcaataagtcatcaatcgcacatgcacaaagttcactggttttatagtaatc |
100 |
Q |
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| T |
3312611 |
ataagatctaagagagtgtccctatcaatctcatcttttgatgtaaaatcaataagccatcaatcgcacatgcacaaagttcactggttttatagtaatc |
3312512 |
T |
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| Q |
101 |
caaaagtgaagatgtgttttacatatatagtttatcttcgtaaatttgtcacaacgtgaatttgtggccaacacaaaaaactgaatggaatgagggaatt |
200 |
Q |
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| T |
3312511 |
caaaagtgaagatgtgttttacatatatagtttatcttcgtaaatttgtcacaacgtgaatttgtggccaacacaaaaaactgaatggaatgagggaatt |
3312412 |
T |
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| Q |
201 |
atggcaatcctatcaagagtgataacataaatttctatctagttgttccttt |
252 |
Q |
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| T |
3312411 |
atggcaattccatcaagagtgataacataaatttctatctagctgttccttt |
3312360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 3319722 - 3319639
Alignment:
| Q |
1 |
ataagatctaagagagtatccttatcaatctcatcttttgatgtaaaatcaataagtcatcaatcgcacatgcacaaagttcac |
84 |
Q |
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| T |
3319722 |
ataagatctaagagagtatccctatcggtctcatcttttggtgtaaaatcaataaatcatcaatcgcacttgcacaaagttcac |
3319639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 213
Target Start/End: Complemental strand, 3319559 - 3319490
Alignment:
| Q |
146 |
ttgtcacaacgtgaatttgtggccaacacaaaa--aactgaatggaatgagggaattatggcaatcctat |
213 |
Q |
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| T |
3319559 |
ttgtcacaacttgaatttgtggccaatacaaaaataaataaatggaatgaggaaattctggcaatcctat |
3319490 |
T |
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