View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_68 (Length: 261)
Name: NF2125_low_68
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_68 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 31334482 - 31334236
Alignment:
| Q |
9 |
ttgaatatgaaacttccatctcatacataaaatttatatatttgtaagatattattacaacttataattgataatcaagcatgagttcacattaccataa |
108 |
Q |
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| T |
31334482 |
ttgaatatgaaactcctatctcatacataaaatttatatttttgtaagatattattacaatttataattgataatcaaacatgagttcacattaccataa |
31334383 |
T |
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| Q |
109 |
tttggtgatcttttattttgtcagcatgagtttgtcagaaacacgttgacattgtaattttattacagccgtataaagtgtaacttttgcaaaaaatatt |
208 |
Q |
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| T |
31334382 |
tttggtgatcttttattttgtc-----gagtttgacagaaacacgttgacattgtaattttattacagccgtataaagtgtaacttttgcaaaaaatatt |
31334288 |
T |
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| Q |
209 |
gtcatttaccatgatttcatcaagctcagggggaatccaaacacaagtagaaa |
261 |
Q |
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| T |
31334287 |
gtcatttaccttgatttcatcaaactca-ggggaatccaaacacaagtagaaa |
31334236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 142
Target Start/End: Complemental strand, 31322241 - 31322102
Alignment:
| Q |
4 |
gatgcttgaatatgaaacttccatctcatacataaaatttatatatttgtaagatattattacaacttataattgata----atcaagcatgagttcaca |
99 |
Q |
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|||||||||| ||||||| ||||||||| |||||| || | |||||| ||||||| ||||||||||||| |||||| ||||| ||||||| |||| |
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| T |
31322241 |
gatgcttgaacatgaaacatccatctca--cataaagttaa-atattttgaagatatgattacaacttatatttgatatataatcaaacatgagtacaca |
31322145 |
T |
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| Q |
100 |
ttaccataatttggtgatcttttattttgtcagcatgagtttg |
142 |
Q |
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| T |
31322144 |
ttaccataatttagcaatcttttattttgtcaccgtgagtttg |
31322102 |
T |
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