View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_69 (Length: 257)
Name: NF2125_low_69
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_69 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 15664552 - 15664311
Alignment:
| Q |
14 |
agatatacacaaaaaataggttataggtcccaccatcattaattatttttactctgtaaaaaataagggtgagccaacaaccgatataattagatggatt |
113 |
Q |
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| T |
15664552 |
agatatacacaaaaaataggttataggttccaccatcattaattatttttactctgtagaaaataaaggtgagccagcaaccgatataattagatggatt |
15664453 |
T |
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| Q |
114 |
ctagcatattagattttaggtccgacttcaaatatctattttctttttggtaaggtgagtacttttcaaaatttgtataagatattttctcttcttactt |
213 |
Q |
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| T |
15664452 |
ctagcatattagattttaggtccgacttcaaatatctattttttttttggt--ggtgagtacttttcaaaatttgtataagatattttctcttcttactt |
15664355 |
T |
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| Q |
214 |
tgtttttaaagagtctaccacattcttagtgatgagaagtgagc |
257 |
Q |
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| T |
15664354 |
tgtttttaaagagtctaccacattcttagtgatgagaagtgagc |
15664311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 3354790 - 3354839
Alignment:
| Q |
14 |
agatatacacaaaaaataggttataggtcccaccatcattaattattttt |
63 |
Q |
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| T |
3354790 |
agatagacacaaaaaataagtggtgggtcccaccatcattaattattttt |
3354839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 5361491 - 5361442
Alignment:
| Q |
14 |
agatatacacaaaaaataggttataggtcccaccatcattaattattttt |
63 |
Q |
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| T |
5361491 |
agatagacacaaaaaataagtggtgggtcccaccatcattaattattttt |
5361442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 27959155 - 27959106
Alignment:
| Q |
14 |
agatatacacaaaaaataggttataggtcccaccatcattaattattttt |
63 |
Q |
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| T |
27959155 |
agatagacacaaaaaataagtggtgggtcccaccatcattaattattttt |
27959106 |
T |
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