View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_70 (Length: 257)
Name: NF2125_low_70
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_70 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 51 - 236
Target Start/End: Original strand, 28710988 - 28711175
Alignment:
| Q |
51 |
atccaaatttatgcgtagcttatcatttc-ttcgaggctgttttctc-actatgttcatctatatttgtattttcatgtatttatttgctctcaaatgtt |
148 |
Q |
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| T |
28710988 |
atccaaatttatgtgtagcttatcatttccttggaggctgttttctttactatgttcatctatatttgtattttcatgtatttatttactcacaaatgtg |
28711087 |
T |
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| Q |
149 |
tttcatgatggtattatgacagaagaacaagttagctctcagaaatccttggaagcattcccatctgggactgttattattctgttat |
236 |
Q |
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| T |
28711088 |
gttcatgatggtattgtgacagaagaacaagtgagctgtcagaaatccttgagagcattcccatttggaactgttatcattctgttat |
28711175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 28716980 - 28717097
Alignment:
| Q |
1 |
tatatcattgaagaaataagacaaatttatttgaagtttccatttattttatccaaatttatgcgtagcttatcatttcttcgaggctgttttctcacta |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
28716980 |
tatatcatggaagaaataagacaaatttatttgaagtttccatttattttatccaaatttatgggtagcttatcatttcttcgaggctgttttcttacta |
28717079 |
T |
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| Q |
101 |
tgttcatctatatttgta |
118 |
Q |
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| T |
28717080 |
tgttcatctatatctgta |
28717097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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