View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2125_low_72 (Length: 256)

Name: NF2125_low_72
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2125_low_72
NF2125_low_72
[»] chr2 (4 HSPs)
chr2 (19-238)||(10075028-10075247)
chr2 (38-238)||(10064311-10064510)
chr2 (80-238)||(10054222-10054380)
chr2 (80-238)||(10032310-10032468)
[»] chr4 (1 HSPs)
chr4 (110-235)||(56203050-56203175)


Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 10075247 - 10075028
Alignment:
Q  19 ggtgaacacattctgataaatatactagcaagactttcatcactcatttgtcagaattgcaaaaattgaaatggttttaatagcgacaagcagaaactca 118  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||    
T  10075247 ggtgaacacattctgatatatatactagcaagactttcatcactcatttgtcagaattgcaaaaattgaaatggcgttaatagcgacaagaagaaactca 10075148  T
Q  119 cgtgagatacagaagagacatatttttcagaagagatggatgccgcagcgcaaggttgtagaattcttctttgtcaatcttcccatcatgatttctgtcc 218  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10075147 cgtcagatacagaagagacatatttttcagaagagatggatgccgcagcgcaaggttgtagaattcttctttgtcaatcttcccatcatgatttctgtcc 10075048  T
Q  219 gcatcttcaaatgtctgaaa 238  Q
    ||||||||||||||||||||    
T  10075047 gcatcttcaaatgtctgaaa 10075028  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 38 - 238
Target Start/End: Complemental strand, 10064510 - 10064311
Alignment:
Q  38 atatactagcaagactttcatcactcatttgtcagaattgcaaaaattgaaatggttttaatagcgacaagcagaaactcacgtgagatacagaagagac 137  Q
    ||||||| ||||| |||||||| || |||   |||||| |||||| |||||||||| |||||||| ||||| ||||||||||||||||||  |||||| |    
T  10064510 atatacttgcaaggctttcatccctgattgaccagaatagcaaaa-ttgaaatggtgttaatagcaacaagaagaaactcacgtgagatagggaagagtc 10064412  T
Q  138 atatttttcagaagagatggatgccgcagcgcaaggttgtagaattcttctttgtcaatcttcccatcatgatttctgtccgcatcttcaaatgtctgaa 237  Q
    |||||| ||||||| ||||| ||| |||  |||||||| |   |||||||||||||||||||||||||||||||| ||||| | || |||||||||||||    
T  10064411 atatttgtcagaagggatggctgctgcatggcaaggttcttccattcttctttgtcaatcttcccatcatgatttgtgtccacttcctcaaatgtctgaa 10064312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 80 - 238
Target Start/End: Complemental strand, 10054380 - 10054222
Alignment:
Q  80 aaaattgaaatggttttaatagcgacaagcagaaactcacgtgagatacagaagagacatatttttcagaagagatggatgccgcagcgcaaggttgtag 179  Q
    |||||||||||||| |||||||| ||||| ||||||||||||||||||  |||||| ||||||||||| ||| ||||  ||| |||  |||||||| |      
T  10054380 aaaattgaaatggtgttaatagcaacaagaagaaactcacgtgagatagggaagagtcatatttttcaaaagcgatgtttgctgcatagcaaggttcttc 10054281  T
Q  180 aattcttctttgtcaatcttcccatcatgatttctgtccgcatcttcaaatgtctgaaa 238  Q
     |||||||| ||||||||||||||||||||||| ||||| | || ||||| ||||||||    
T  10054280 cattcttctctgtcaatcttcccatcatgatttgtgtccacttcctcaaacgtctgaaa 10054222  T

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Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 80 - 238
Target Start/End: Complemental strand, 10032468 - 10032310
Alignment:
Q  80 aaaattgaaatggttttaatagcgacaagcagaaactcacgtgagatacagaagagacatatttttcagaagagatggatgccgcagcgcaaggttgtag 179  Q
    |||||||||||||| |||||||| ||||| ||| ||||||||||||||  |||||| ||||||||||| ||| ||||  ||| |||  |||||||| |      
T  10032468 aaaattgaaatggtgttaatagcaacaagaagacactcacgtgagatagggaagagtcatatttttcaaaagcgatgtttgctgcatagcaaggttcttc 10032369  T
Q  180 aattcttctttgtcaatcttcccatcatgatttctgtccgcatcttcaaatgtctgaaa 238  Q
     |||||||| ||||||||||||||||||||||| ||||| | || ||||| ||||||||    
T  10032368 cattcttctctgtcaatcttcccatcatgatttgtgtccacttcctcaaacgtctgaaa 10032310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 235
Target Start/End: Complemental strand, 56203175 - 56203050
Alignment:
Q  110 agaaactcacgtgagatacagaagagacatatttttcagaagagatggatgccgcagcgcaaggttgtagaattcttctttgtcaatcttcccatcatga 209  Q
    |||||||||| | |||||| |||||| ||||||||||||||| |||||||||||||   |||||||     ||||||| ||||||||||||||||||||     
T  56203175 agaaactcacttcagatactgaagagtcatatttttcagaagggatggatgccgcaagacaaggtttcgccattcttccttgtcaatcttcccatcatgt 56203076  T
Q  210 tttctgtccgcatcttcaaatgtctg 235  Q
    ||| | || || || |||||||||||    
T  56203075 tttgtatcagcttcctcaaatgtctg 56203050  T

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