View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_81 (Length: 249)
Name: NF2125_low_81
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_81 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 5435112 - 5435203
Alignment:
| Q |
13 |
aatatgaagagattaagccacctgaggttgaggacttttgttacattacggacaatacatactccaaggaagaggtgaatcttgtagtggaa |
104 |
Q |
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| T |
5435112 |
aatatgaagagattaagccacctgaggttgaggacttttgttacattacggacaatacatactccaaggaagaggtgaatcttgtagtggaa |
5435203 |
T |
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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 5435288 - 5435348
Alignment:
| Q |
189 |
aaaggttttgaccatggaggctgatattttgaagtcattgaagtttgaattgggtggtcct |
249 |
Q |
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| T |
5435288 |
aaaggttttgaccatggaggctgatattttgaagtcattgaagtttgaattgggtggtcct |
5435348 |
T |
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