View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_82 (Length: 249)
Name: NF2125_low_82
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_82 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 2963255 - 2963479
Alignment:
| Q |
18 |
acacacaccccttataatttcatgttt-acatatgaacggacaagcaagggtaaaggcaaaggaagtttgatatcgatgattagcctaaaatgttgctct |
116 |
Q |
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| T |
2963255 |
acacacaccccttataatttcatgttttacatatgaacggacaagcaagggtaaaggcaaaggaagtttgatatcgatgattagcctaaaatgttactct |
2963354 |
T |
|
| Q |
117 |
tgtaattaattttttgtaaactttatgggagcaactttatgtaatcctgtaatcatgatgta-ctatgacttaatc-aaatgtataactttgaaatacgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
2963355 |
tgtaattaattttttgtaaactttatgggagcaactttatataatcctgtaatcatgatgtacctatgacttaatcaaaatgtataactttgaaatacgt |
2963454 |
T |
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| Q |
215 |
ggtattatcaatgtaaattcctatg |
239 |
Q |
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||||||||||||||||||||||||| |
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| T |
2963455 |
ggtattatcaatgtaaattcctatg |
2963479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 2942569 - 2942752
Alignment:
| Q |
18 |
acacacaccccttataatttcatgttt-acatatgaacggacaagcaagggtaaaggcaaaggaagtttgatatcgatgattagcctaaaatgttgctct |
116 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2942569 |
acacacaccccttataatttcatgttttacatatgaacggacaagcaagggtaaaggcaaaggaagtttgatatcgatgattagcctaaaatgttactct |
2942668 |
T |
|
| Q |
117 |
tgtaattaattttttgtaaactttatgggagcaactttatgtaatcctgtaatcatgatgta-ctatgacttaatcaaatgtat |
199 |
Q |
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| T |
2942669 |
tgtaattaattttttgtaaactttatgggagcaactttatgtaatcccttaatcatgatgtacctatgacttaatcaaatgtat |
2942752 |
T |
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