View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2125_low_83 (Length: 247)

Name: NF2125_low_83
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2125_low_83
NF2125_low_83
[»] chr6 (6 HSPs)
chr6 (23-240)||(6395231-6395448)
chr6 (47-207)||(6399658-6399818)
chr6 (29-180)||(14821138-14821289)
chr6 (38-206)||(6426912-6427083)
chr6 (121-180)||(8913661-8913720)
chr6 (129-180)||(6596546-6596597)
[»] chr1 (6 HSPs)
chr1 (63-180)||(29691002-29691119)
chr1 (63-180)||(29718514-29718631)
chr1 (63-180)||(29658487-29658604)
chr1 (121-190)||(33160945-33161014)
chr1 (121-180)||(52093225-52093284)
chr1 (70-180)||(30827546-30827656)
[»] chr7 (1 HSPs)
chr7 (89-240)||(15091714-15091865)
[»] chr3 (2 HSPs)
chr3 (121-177)||(514317-514373)
chr3 (129-189)||(51764046-51764106)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 23 - 240
Target Start/End: Complemental strand, 6395448 - 6395231
Alignment:
Q  23 cctatgacaatcagactaacttcgttaatacaattcaccgtctgctatccaagtctccatgtatacaacatttggaactttgtcacattacttgtctaaa 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6395448 cctatgacaatcagactaacttcgttaatacaattcaccgtctgctatccaagtctccatgtatacaacatttggaactttgtcacattactagtctaaa 6395349  T
Q  123 tgatcaacatgttgttgatttctctttgtttcttggtaatttggtatctataaacctttatggttgttatctcacagaaacaaccnnnnnnncactcgtt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||       ||||||||    
T  6395348 tgatcaacatgttgttgatttctctttgtttcttggtaatttggtatctataaacctttgtggtggttatctcacagaaacaacctttttttcactcgtt 6395249  T
Q  223 agaaactgtcctttgctt 240  Q
    ||||||||||||||||||    
T  6395248 agaaactgtcctttgctt 6395231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 47 - 207
Target Start/End: Complemental strand, 6399818 - 6399658
Alignment:
Q  47 ttaatacaattcaccgtctgctatccaagtctccatgtatacaacatttggaactttgtcacattacttgtctaaatgatcaacatgttgttgatttctc 146  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| |  ||   ||||||||||||||||||||||||||||    
T  6399818 ttaatacaattcaccgtctgttatccaagtctccatgtatacaatatttggaactttgtaacactgatt---taaatgatcaacatgttgttgatttctc 6399722  T
Q  147 tttgtttcttggtaatttggtatctataaacctttatg---gttgttatctcacagaaacaacc 207  Q
    | |||||||| |||||||||| ||| ||||||||  ||   |||||||||||||||||||||||    
T  6399721 tgtgtttcttagtaatttggtgtctgtaaaccttggtgcttgttgttatctcacagaaacaacc 6399658  T

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Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 180
Target Start/End: Complemental strand, 14821289 - 14821138
Alignment:
Q  29 acaatcagactaacttcgttaatacaattcaccgtctgctatccaagtctccatgtatacaacatttggaactttgtcacattacttgtctaaatgatca 128  Q
    ||||| |||||||||| |||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||     || |  || ||||||| ||||    
T  14821289 acaatgagactaactttgttagtacaattcaacgtctgttatccaagtctccatgtatacaacatttggaacttcaaagcacttattttctaaataatca 14821190  T
Q  129 acatgttgttgatttctctttgtttcttggtaatttggtatctataaacctt 180  Q
    ||||||||||||||| | ||||| ||||||||||||||||||||||||||||    
T  14821189 acatgttgttgatttttgtttgtgtcttggtaatttggtatctataaacctt 14821138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 206
Target Start/End: Complemental strand, 6427083 - 6426912
Alignment:
Q  38 ctaacttcgttaatacaattcaccgtctgctatccaagtctccatgtatacaacatttggaactttgtcacattacttgtctaaatgatcaacatgttgt 137  Q
    |||||||| ||||| |||||||| || || ||||||||| ||||||||||||||||||||||||| ||   | | ||| |||||  ||||||| |||||     
T  6427083 ctaacttcattaattcaattcactgtatgttatccaagtgtccatgtatacaacatttggaacttcgtagtacttcttttctaaccgatcaacttgttga 6426984  T
Q  138 tgatttctctttgtttcttggtaatttggtatctataaacctttatggttg---ttatctcacagaaacaac 206  Q
    |||  | | ||||||| ||||||| ||||| ||||||||||||  ||||||   | ||||||||||||||||    
T  6426983 tgagatgtgtttgttttttggtaagttggtgtctataaaccttagtggttgtcatcatctcacagaaacaac 6426912  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 180
Target Start/End: Original strand, 8913661 - 8913720
Alignment:
Q  121 aatgatcaacatgttgttgatttctctttgtttcttggtaatttggtatctataaacctt 180  Q
    |||||||||||||||||  | || ||||||||||||||||||||||| ||||||||||||    
T  8913661 aatgatcaacatgttgtcaagttgtctttgtttcttggtaatttggtgtctataaacctt 8913720  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 6596546 - 6596597
Alignment:
Q  129 acatgttgttgatttctctttgtttcttggtaatttggtatctataaacctt 180  Q
    |||||||| ||  |||||||||||||||||| ||||||| ||||||||||||    
T  6596546 acatgttgctgggttctctttgtttcttggtgatttggtttctataaacctt 6596597  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 180
Target Start/End: Original strand, 29691002 - 29691119
Alignment:
Q  63 tctgctatccaagtctccatgtatacaacatttggaactttgtcacattacttgtctaaatgatcaacatgttgttgatttctctttgtttcttggtaat 162  Q
    |||| ||||||| ||||||| ||||||||||||||| ||| |||||| || || ||| ||||||||||||||||  || |||||||||||||||| | ||    
T  29691002 tctgttatccaactctccatatatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttctctttgtttcttgctcat 29691101  T
Q  163 ttggtatctataaacctt 180  Q
    ||||| ||||||||||||    
T  29691102 ttggtgtctataaacctt 29691119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 180
Target Start/End: Original strand, 29718514 - 29718631
Alignment:
Q  63 tctgctatccaagtctccatgtatacaacatttggaactttgtcacattacttgtctaaatgatcaacatgttgttgatttctctttgtttcttggtaat 162  Q
    |||| ||||||| ||||||| ||||||||||||||| ||| |||||| || || ||| ||||||||||||||||  || |||||||||||||||| | ||    
T  29718514 tctgttatccaactctccatatatacaacatttggatcttagtcacactaattttctcaatgatcaacatgttgccgagttctctttgtttcttgctcat 29718613  T
Q  163 ttggtatctataaacctt 180  Q
    ||||| ||||||||||||    
T  29718614 ttggtgtctataaacctt 29718631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 180
Target Start/End: Original strand, 29658487 - 29658604
Alignment:
Q  63 tctgctatccaagtctccatgtatacaacatttggaactttgtcacattacttgtctaaatgatcaacatgttgttgatttctctttgtttcttggtaat 162  Q
    |||| ||||||| ||||| | ||||||||||||||| ||| ||| || ||  | ||| ||||||||||||||||  || |||||||||||||||| | ||    
T  29658487 tctgttatccaactctccgtatatacaacatttggatcttagtcgcactaagtttctcaatgatcaacatgttgccgagttctctttgtttcttgctcat 29658586  T
Q  163 ttggtatctataaacctt 180  Q
    ||||| ||||||||||||    
T  29658587 ttggtgtctataaacctt 29658604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 33161014 - 33160945
Alignment:
Q  121 aatgatcaacatgttgttgatttctctttgtttcttggtaatttggtatctataaacctttatggttgtt 190  Q
    ||||||||||||||||  || |||||||||||||||| |  |||||| |||||||||||| |||| ||||    
T  33161014 aatgatcaacatgttgccgagttctctttgtttcttgctgctttggtgtctataaaccttaatggatgtt 33160945  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 52093284 - 52093225
Alignment:
Q  121 aatgatcaacatgttgttgatttctctttgtttcttggtaatttggtatctataaacctt 180  Q
    ||||||||| || ||||||  || |||||| |||||||||||||||| ||||||||||||    
T  52093284 aatgatcaagatattgttgggttgtctttggttcttggtaatttggtgtctataaacctt 52093225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 30827656 - 30827546
Alignment:
Q  70 tccaagtctccatgtatacaacatttggaactttgtcacattacttgtctaaatgatcaacatgttgttgatttctctttgtttcttggtaatttggtat 169  Q
    ||||| ||||||| ||||||||||||||| ||| ||  || |  || ||| ||||||||||||||||  || ||||||||| |||||  | |||| || |    
T  30827656 tccaactctccatatatacaacatttggatcttagtttcacttgttttctcaatgatcaacatgttgccgacttctctttgcttcttcctcatttagtgt 30827557  T
Q  170 ctataaacctt 180  Q
    |||||||||||    
T  30827556 ctataaacctt 30827546  T

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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 89 - 240
Target Start/End: Original strand, 15091714 - 15091865
Alignment:
Q  89 aacatttggaactttgtcacattacttgtctaaatgatcaacatgttgttgatttctctttgtttcttggtaatttggtatctataaacctttatg---g 185  Q
    ||||||||||||||||| ||| || || |   ||||||||||||||||||||||||||| | |||||| |||||||||| |||||||||||| |||   |    
T  15091714 aacatttggaactttgtaacactagtttt---aatgatcaacatgttgttgatttctctctatttcttagtaatttggtgtctataaaccttaatgcttg 15091810  T
Q  186 ttgttatctcacagaaacaaccnnnnnnncactcgttagaaactgtcctttgctt 240  Q
    | || |||||||||||||||||       |||||| |||||||||||||| ||||    
T  15091811 tcgtaatctcacagaaacaaccttgttttcactcggtagaaactgtccttcgctt 15091865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 514317 - 514373
Alignment:
Q  121 aatgatcaacatgttgttgatttctctttgtttcttggtaatttggtatctataaac 177  Q
    ||||||||||||||||| ||||| || |||||||||||| ||||| | |||||||||    
T  514317 aatgatcaacatgttgtggatttgtcattgtttcttggtcatttgttgtctataaac 514373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 51764046 - 51764106
Alignment:
Q  129 acatgttgttgatttctctttgtttcttggtaatttggtatctataaacctttatggttgt 189  Q
    |||||||||  |||| |||||||||||| |||||||||| || |||||||||  |||||||    
T  51764046 acatgttgtaaatttgtctttgtttcttagtaatttggtgtccataaaccttagtggttgt 51764106  T

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