View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_85 (Length: 246)
Name: NF2125_low_85
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_85 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 15663997 - 15664145
Alignment:
| Q |
19 |
ctttgtgaaggggaacacattggtttatgtaccnnnnnnnatgttcctctgcaatgaaattgattgagggattaattaactcgcttcaatatctatacaa |
118 |
Q |
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| T |
15663997 |
ctttgtgaaggggaacacattggtttatgtacctttttttatgttcctctgcaatgaaattgattgagggattaattaactcgcttcaatatctatacaa |
15664096 |
T |
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| Q |
119 |
ttgataagaaaactcattttaagatatcaatatataatggtctaatatt |
167 |
Q |
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| T |
15664097 |
ttgataagaaaactcattttaagatgtcaatatataatggtctaatatt |
15664145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 15664205 - 15664288
Alignment:
| Q |
163 |
atattagaggaaacatttcccttgttttattctataagtacgactcaaatggtaaaaggctgcataaatatttgatatatttac |
246 |
Q |
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| T |
15664205 |
atattagaggaaacatttcccttgttttattctataagtacgactcaaatggtaaaaggctgcataaatatttgatatatttac |
15664288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 28739480 - 28739435
Alignment:
| Q |
196 |
ataagtacgactcaaatggtaaaaggctgcataaatatttgatata |
241 |
Q |
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|||| ||||||||||||||||||| | ||||| ||||||||||||| |
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| T |
28739480 |
ataactacgactcaaatggtaaaatgatgcatgaatatttgatata |
28739435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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