View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_88 (Length: 246)
Name: NF2125_low_88
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_88 |
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Alignment Details
Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 4884140 - 4884055
Alignment:
| Q |
143 |
tacagacatttgcaatggaccacattccatgatcccaaattctatccacatgaaatctccattctcaattccattcacctaacagc |
228 |
Q |
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| T |
4884140 |
tacagacatttgcaatggaccacattccatgatcccaaattctatccacatgaaatccccattctcaattccattcacctaacagc |
4884055 |
T |
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Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 4905372 - 4905284
Alignment:
| Q |
140 |
tagtacagacatttgcaatggaccacattccatgatcccaaattctatccacatgaaatctccattctcaattccattcacctaacagc |
228 |
Q |
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| T |
4905372 |
tagtacagacattaacaatggaccacattccatgatcccaaattctatccacatgaaatctccattctcaattccattcacctaacagc |
4905284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 4924638 - 4924550
Alignment:
| Q |
140 |
tagtacagacatttgcaatggaccacattccatgatcccaaattctatccacatgaaatctccattctcaattccattcacctaacagc |
228 |
Q |
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| T |
4924638 |
tagtacagacattaacaatggaccacattccatgatcccaaatactatccacatgaaatctccattctcaattccattcacctaacagc |
4924550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 4646216 - 4646295
Alignment:
| Q |
140 |
tagtacagacatttgcaatggaccacattccatgatcccaaattctatccacatgaaatctccattctcaattccattca |
219 |
Q |
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| T |
4646216 |
tagtacagacatttacaatggaccacattccatgatcccaaatttaatccacatgaaacaccgattctcaattcaattca |
4646295 |
T |
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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 13096160 - 13096229
Alignment:
| Q |
142 |
gtacagacatttgcaatggaccacattccatgatcccaaattctatccacatgaaatctccattctcaat |
211 |
Q |
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| T |
13096160 |
gtacagacatttgcaatggaccacactccgtgatcccaaattctatccacatgaactatccactctcaat |
13096229 |
T |
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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 9112436 - 9112479
Alignment:
| Q |
168 |
tccatgatcccaaattctatccacatgaaatctccattctcaat |
211 |
Q |
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| T |
9112436 |
tccatgatcacaaattctatccacatgaaatctccactctcaat |
9112479 |
T |
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