View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2125_low_89 (Length: 246)
Name: NF2125_low_89
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_89 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 5435599 - 5435376
Alignment:
| Q |
19 |
ccacactactaaaagtagaacataagcacacataatacccgaatccatgtcataacctataactactatgagatgggttgaagaatgagataacttacat |
118 |
Q |
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| T |
5435599 |
ccacactactaaaagtagaacataagcacacataatacccgaatccatgtcataacctataactactatgagatgggttgaagaatgagataacttacat |
5435500 |
T |
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| Q |
119 |
caacaccctctagaccaactttagtgatgaatcttctgcaaacagaaaaagaaaatgaaatgtgagctactatacaaaaacaatagtaccattcaacata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5435499 |
caacaccctctagaccaactttagtgatgaatcttctgcaaacagaaaaagaaaatgaaatgtgagctactatacaaaaacaatagtaccattcaacata |
5435400 |
T |
|
| Q |
219 |
caaagaaacataatcaataaaaca |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
5435399 |
caaagaaacataatcaataaaaca |
5435376 |
T |
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