View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2125_low_92 (Length: 245)
Name: NF2125_low_92
Description: NF2125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2125_low_92 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 29461287 - 29461514
Alignment:
| Q |
1 |
atggatgagagtgatgaggaagcatattgtggccttaatagaggaagtttcttagcatgggaagatctaagagttatgttgccaaattttgggaaaggac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29461287 |
atggatgagagtgatgaggaagcatattgtggccttaatagaggaagtttcttagcatgggaagatctaagagttatgttgccaaattttgggaaaggac |
29461386 |
T |
|
| Q |
101 |
caaccaagaggttacttaatgggttaaatggttttgctgagcctggtagaatcatggctattatgggtccttctggctctggaaaatccactttgcttga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29461387 |
caaccaagaggttacttaatgggttaaatggttttgctgagcctggtagaatcatggctattatgggtccttctggctctggaaaatccactttgcttga |
29461486 |
T |
|
| Q |
201 |
tacacttgcaggttcataactagttact |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
29461487 |
tacacttgcaggttcataactagttact |
29461514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 50 - 215
Target Start/End: Original strand, 29426069 - 29426234
Alignment:
| Q |
50 |
tcttagcatgggaagatctaagagttatgttgccaaattttgggaaaggaccaaccaagaggttacttaatgggttaaatggttttgctgagcctggtag |
149 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
29426069 |
tcttagcatgggaggatgtaagagttatgttgccaaattttgggaaaggaccaactaaaaggttacttaatggtcttaatggttttgctgagcctggtag |
29426168 |
T |
|
| Q |
150 |
aatcatggctattatgggtccttctggctctggaaaatccactttgcttgatacacttgcaggttc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29426169 |
aatcatggctattatgggtccttctggctctggaaaatccactttgcttgatacacttgcaggttc |
29426234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 29476603 - 29476656
Alignment:
| Q |
148 |
agaatcatggctattatgggtccttctggctctggaaaatccactttgcttgat |
201 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| ||| | |||||| |
|
|
| T |
29476603 |
agaatcatggctattatgggtccatctggttctggaaaatctactcttcttgat |
29476656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 37290237 - 37290273
Alignment:
| Q |
155 |
tggctattatgggtccttctggctctggaaaatccac |
191 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37290237 |
tggctattatgggtccatctggctctggaaaatccac |
37290273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 191
Target Start/End: Original strand, 36068327 - 36068412
Alignment:
| Q |
106 |
aagaggttacttaatgggttaaatggttttgctgagcctggtagaatcatggctattatgggtccttctggctctggaaaatccac |
191 |
Q |
| |
|
|||| ||||||| |||| ||| |||||||||||| |||||||| ||||||||| |||||||||||||||||| ||| ||| |||| |
|
|
| T |
36068327 |
aagaagttacttgatggtgtaactggttttgctgaacctggtaggatcatggctgttatgggtccttctggctgtggcaaaaccac |
36068412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University