View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21260_high_2 (Length: 599)
Name: NF21260_high_2
Description: NF21260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21260_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 11 - 303
Target Start/End: Complemental strand, 38023504 - 38023212
Alignment:
| Q |
11 |
atcatcaagaaaagaaaaagaagagtacctataagttgaggaagaagagaggaatctgaaccattacacggatacagagagagacgaccgtgaagcagag |
110 |
Q |
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| T |
38023504 |
atcatcaagaaaagaaaaagaagagtacctataagttgaggaagaagagaggaatctgaaccattacacggatacagagagagacgaccgtgaagcagag |
38023405 |
T |
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| Q |
111 |
ggtagagcagagtattgtctccacaatcaacagaggaatcccctagtataaacaatgatgataaaagtgatccgtttcttccattggctgcaacatttga |
210 |
Q |
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| T |
38023404 |
ggtagagcagagtattgtctccacaatcaacagaggaatcccctagtataaacaatgatgatagaagtgatccgtttcttccattggctgcaacatttga |
38023305 |
T |
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| Q |
211 |
atctgtttcctcggtgtattgttggccatgaactatgctgctaaacatgcacattagcataacaactgcaggaggagaatgaactagagaccc |
303 |
Q |
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| T |
38023304 |
atctgtttcctcggtgtattgttggccatgaactatgctgctaaacatgcacattagcataacaactgcaggaggagaatgaactagagaccc |
38023212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 366 - 582
Target Start/End: Complemental strand, 38023149 - 38022933
Alignment:
| Q |
366 |
gagcatgaactaatttgttgccaaggttggtcatttggtgtcactgctctgccattccagttagaatgaaggtgcttgtttggcacaaaattaaaagaaa |
465 |
Q |
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| T |
38023149 |
gagcatgaactaatttgttgccaaggttggtgatttggtgtcactgctctgccattccagttagaatgaaggtgcttgtttggcacaaaattaaaagaaa |
38023050 |
T |
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| Q |
466 |
agctaaaataatcctgcaaaataattagcttattggtttcaaccttaagctcacttgtctaaattgaagaagtgttttttgtaagttagcaatcaaatga |
565 |
Q |
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| T |
38023049 |
agctaaaataatcctgcaaaataattagcttattggtttcaaccttaagctcacttgtctaaattgaagaagtgttttttgtaagttagcaatcaaatga |
38022950 |
T |
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| Q |
566 |
agtttgatgttcaaaat |
582 |
Q |
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| T |
38022949 |
agtttgatgttcaaaat |
38022933 |
T |
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