View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21260_high_23 (Length: 243)
Name: NF21260_high_23
Description: NF21260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21260_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3517402 - 3517181
Alignment:
| Q |
1 |
attggaggcaccaaattgacggtgtctttaattagagattttccattgtgatatctttaagttgaattttagtccttaaaaagaaaatctttttaatttt |
100 |
Q |
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| T |
3517402 |
attggaggcaccaaattgacagtgtctttaattagagtttttccattgtgatatctttaagttgaattttagtccttaaaaagaaaatccttttaatttt |
3517303 |
T |
|
| Q |
101 |
tcattgtgatataagattcctttcgatttagttcctaatttagacatgacatacaaaacc-ataaggtgtattcttttttggttacaatcgataaggtgt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||| |
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| T |
3517302 |
tcattgtgatataagattcctttcgatttagttcctaatttagacatgacatacaaaaccgataaggtgtattctttttttgttacaaccgataaggtgt |
3517203 |
T |
|
| Q |
200 |
atttagagtgatgacaacacta |
221 |
Q |
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||| || ||||||||||||||| |
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| T |
3517202 |
attcagggtgatgacaacacta |
3517181 |
T |
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