View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21260_high_3 (Length: 596)

Name: NF21260_high_3
Description: NF21260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21260_high_3
NF21260_high_3
[»] chr2 (3 HSPs)
chr2 (1-578)||(14741638-14742214)
chr2 (40-331)||(14734910-14735200)
chr2 (204-299)||(14998525-14998620)
[»] chr5 (1 HSPs)
chr5 (54-284)||(29467226-29467453)


Alignment Details
Target: chr2 (Bit Score: 550; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 1 - 578
Target Start/End: Complemental strand, 14742214 - 14741638
Alignment:
Q  1 aatgctccgactggatctaagaagccgctgcaacgtgctcataagcaaatgagtaaaaagcttgctctagaagccacttatgcaaacaagactagagaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14742214 aatgctccgactggatctaagaagccgctgcaacgtgctcataagcaaatgagtaataagcttgctctagaagccacttatgcaaacaagactagagaat 14742115  T
Q  101 taagtactgaggttggttcatcatttttattttgcaaagttgtgtttaaatttaatatttgtatggttatcataagaaatatatcagaagattaacttat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14742114 taagtactgaggttggttcatcatttttattttgcaaagttgtgttcaaatttaatatt-gtatggttatcataagaaatatatcagaagattaacttat 14742016  T
Q  201 gcatttaatttttgttgcttcagctgtccaatgttgagacggctttgagaagtctcaaaacaacaatgattgcacagtgcaggttcgtgaaagaatcacc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14742015 gcatttaatttttgttgcttcagctgtccaatgttgagacggctttgagaagtctcaaaacaacaatgattgcacagtgcaggttcgtgaaagaatcacc 14741916  T
Q  301 cattattttcatttttgtagtctcatgttcaaattgccaaaatagtgctacatggtaggagtttaatagattttgatatcatcgacacgcttacgctctc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14741915 cattattttcatttttgtagtctcatgttcaaattgccaaaatagtgctacatggtaggagtttaatagattttgatatcatcgacacgcttatgctctc 14741816  T
Q  401 atggatctgaatcatctgatcaagatcgaataacctactattcaatgttatattttatagcaccaactttgctcctctaaataggccactgagaattcat 500  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14741815 atggatctgaattatctgatcaagatcgaataacttactattcaatgttatattttatagcaccaactttgctcctctaaataggccactgagaattcat 14741716  T
Q  501 gatgcatttccttttggtcatgttatggaactatgttgtttattatgttctgttgttgagaatattgtaggaagttgt 578  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14741715 gatgcatttccttttggtcatgttatggaactatgttgtttattatgttctgttgttgagaatattgtaggaagttgt 14741638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 40 - 331
Target Start/End: Complemental strand, 14735200 - 14734910
Alignment:
Q  40 cataagcaaatgagtaaaaagcttgctctagaagccacttatgcaaacaagactagagaattaagtactgaggttggttcatcatttttattttgcaaag 139  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  14735200 cataagcaattgagtaaaaagcttgctctagaagccacttatgcaaacaagactagagaattaagtactgaggttggttcatcatttttgttttgcagag 14735101  T
Q  140 ttgtgtttaaatttaatatttgtatggttatcataagaaatatatcagaagattaacttatgcatttaatttttgttgcttcagctgtccaatgttgaga 239  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||  |||| |    
T  14735100 ttgtgtttaaattttatatt-gtatggttatcataagaaatatatcagaagattaacttatgcatttaatttttgttgctctacttgtccaagattgata 14735002  T
Q  240 cggctttgagaagtctcaaaacaacaatgattgcacagtgcaggttcgtgaaagaatcacccattattttcatttttgtagtctcatgttca 331  Q
    |||||||||||||||||||||||||  | |||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  14735001 cggctttgagaagtctcaaaacaacggtcattgcacagtacaggttcgtcaaagaatcacccattattttcatttttgtggtctcatgttca 14734910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 299
Target Start/End: Original strand, 14998525 - 14998620
Alignment:
Q  204 tttaatttttgttgcttcagctgtccaatgttgagacggctttgagaagtctcaaaacaacaatgattgcacagtgcaggttcgtgaaagaatcac 299  Q
    ||||| |||||||| | |||||||| ||  |||| | |||||||| |||||||||||||| |   |||||| |||||||||| |||||| ||||||    
T  14998525 tttaacttttgttgttccagctgtctaagattgatatggctttgacaagtctcaaaacaaaagcaattgcaaagtgcaggtttgtgaaaaaatcac 14998620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 54 - 284
Target Start/End: Original strand, 29467226 - 29467453
Alignment:
Q  54 taaaaagcttgctctagaagccacttatgcaaacaagactagagaattaagtactgaggttggttcatcatttttattttgcaaagttgtgtttaaatt- 152  Q
    ||||| |||||||| |||||| |||||||| || | |||||| |||||||| |||||||||||||||| |||||| ||   || || |||||||||| |     
T  29467226 taaaaggcttgctcaagaagcaacttatgccaatatgactagggaattaagcactgaggttggttcattatttttttt---cagagctgtgtttaaaatc 29467322  T
Q  153 taatatttgtatggttatcataagaaatatatcagaagattaacttatgcatttaatttttgttgcttcagctgtccaatgttgagacggctttgagaag 252  Q
    ||||  | ||||| |  |   ||||| ||| ||||| | |||| || ||||||||| |||||||| | |||||||| || ||||| | ||||||||||||    
T  29467323 taatgat-gtatgttacttggaagaagtatttcagacggttaatttgtgcatttaacttttgttgttccagctgtctaaggttgatatggctttgagaag 29467421  T
Q  253 tctcaaaacaacaatgattgcacagtgcaggt 284  Q
    |||||||||||||  |||| ||||||||||||    
T  29467422 tctcaaaacaacagcgatttcacagtgcaggt 29467453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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