View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21260_high_5 (Length: 483)

Name: NF21260_high_5
Description: NF21260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21260_high_5
NF21260_high_5
[»] chr1 (7 HSPs)
chr1 (1-268)||(574205-574469)
chr1 (228-275)||(30780985-30781032)
chr1 (166-219)||(3622591-3622643)
chr1 (144-216)||(41883044-41883117)
chr1 (179-219)||(4530249-4530289)
chr1 (228-276)||(36385667-36385715)
chr1 (228-276)||(38688642-38688690)
[»] chr3 (5 HSPs)
chr3 (54-275)||(49245176-49245396)
chr3 (228-275)||(45297549-45297596)
chr3 (166-269)||(21811885-21811988)
chr3 (166-219)||(37105016-37105069)
chr3 (179-219)||(44384570-44384610)
[»] scaffold0129 (1 HSPs)
scaffold0129 (228-276)||(43219-43267)
[»] chr8 (1 HSPs)
chr8 (139-218)||(41706688-41706767)
[»] chr6 (1 HSPs)
chr6 (228-275)||(28975340-28975387)
[»] chr5 (3 HSPs)
chr5 (228-275)||(4301905-4301952)
chr5 (228-275)||(12201377-12201424)
chr5 (166-219)||(2458293-2458346)
[»] chr4 (3 HSPs)
chr4 (228-275)||(41261891-41261938)
chr4 (166-219)||(37275144-37275197)
chr4 (170-219)||(39862822-39862871)
[»] chr2 (1 HSPs)
chr2 (228-269)||(43790430-43790471)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 574205 - 574469
Alignment:
Q  1 gtgtcgcgatgtttagcatttttggtataaatataatacannnnnnnnnnnnnatgagcaatggatgggaaaaacactaagaaaccaagttagctaaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||| ||||||||||    
T  574205 gtgtcgcgatgtttagcatttttggtataaatataatacaattttttttt---atgagcaatggatgggaaaaacactaagaaaccaaggtagctaaaca 574301  T
Q  101 aaaattcaggatctgaaaaagagggagatggtagggactaggtaggttgaagacaagttataaagatatagtgtagacagactatagtaagatcaatgtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  574302 aaaattcaggatctgaaaaagagggagatggtagggactaggtaggttgaagacaagttataaagatatagtgtagactgactatagtaagatcaatgtt 574401  T
Q  201 tctatgtaatctaatggttgnnnnnnnctttcccatgataggaaacaactctccttttccatattaaa 268  Q
    |||||||||| |||||||||       |||||| ||||||  |||||||||||||||  |||||||||    
T  574402 tctatgtaatttaatggttgaaaaaaactttcctatgataaaaaacaactctcctttctcatattaaa 574469  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 30780985 - 30781032
Alignment:
Q  228 ctttcccatgataggaaacaactctccttttccatattaaaccccacc 275  Q
    |||||||||||| ||||||||||||||||| |||| ||||||| ||||    
T  30780985 ctttcccatgatgggaaacaactctcctttcccatgttaaacctcacc 30781032  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 3622591 - 3622643
Alignment:
Q  166 atatagtgtagacagactatagtaagatcaatgtttctatgtaatctaatggtt 219  Q
    ||||||||| ||||| ||||||||||||||||||| || | |||||||||||||    
T  3622591 atatagtgtggacagtctatagtaagatcaatgttcct-tttaatctaatggtt 3622643  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 41883117 - 41883044
Alignment:
Q  144 aggttgaagacaa-gttataaagatatagtgtagacagactatagtaagatcaatgtttctatgtaatctaatg 216  Q
    ||||||||||||| || | ||||||||||||| || |||||||| ||| || ||||||||| | ||||||||||    
T  41883117 aggttgaagacaaagtgagaaagatatagtgtggatagactataataaaataaatgtttctctttaatctaatg 41883044  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 4530289 - 4530249
Alignment:
Q  179 agactatagtaagatcaatgtttctatgtaatctaatggtt 219  Q
    |||||||| || ||||||||||||||| |||||||||||||    
T  4530289 agactataatatgatcaatgtttctatttaatctaatggtt 4530249  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 36385715 - 36385667
Alignment:
Q  228 ctttcccatgataggaaacaactctccttttccatattaaaccccacca 276  Q
    |||||||||||| | ||||||||  ||||||||||| ||||||||||||    
T  36385715 ctttcccatgatggaaaacaacttcccttttccatactaaaccccacca 36385667  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 38688642 - 38688690
Alignment:
Q  228 ctttcccatgataggaaacaactctccttttccatattaaaccccacca 276  Q
    ||||||||| || |||||||||| | |||| ||||||||||||||||||    
T  38688642 ctttcccatcatgggaaacaacttttctttcccatattaaaccccacca 38688690  T

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Target: chr3 (Bit Score: 121; Significance: 8e-62; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 54 - 275
Target Start/End: Original strand, 49245176 - 49245396
Alignment:
Q  54 atgagcaatggatgggaaaaacactaagaaaccaagttagctaaacaaaaattcaggatctgaaaaagagggagatggtagggactaggtaggttgaaga 153  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  49245176 atgagcaatggatgggaaaaacactaagaaaccaaggtagttaaacaaaaattcag-atctgaaaaagagggagatggtagggactacgtacgttgaaga 49245274  T
Q  154 caagttataaagatatagtgtagacagactatagtaagatcaatgtttctatgtaatctaatggttgnnnnnnnctttcccatgataggaaacaactctc 253  Q
    ||||||||||||||||| ||||| ||||||||| ||| ||||||||| ||||||||| |||||||||       |||| |||||||   ||| |||||||    
T  49245275 caagttataaagatataatgtaggcagactataataaaatcaatgttcctatgtaatttaatggttgaaaaaaacttttccatgatgaaaaataactctc 49245374  T
Q  254 cttttccatattaaaccccacc 275  Q
    ||||  |||||||||| |||||    
T  49245375 ctttcgcatattaaactccacc 49245396  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 45297596 - 45297549
Alignment:
Q  228 ctttcccatgataggaaacaactctccttttccatattaaaccccacc 275  Q
    |||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  45297596 ctttcccatgatgggaaacaactctcctttcccatactaaaccccacc 45297549  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 269
Target Start/End: Complemental strand, 21811988 - 21811885
Alignment:
Q  166 atatagtgtagacagactatagtaagatcaatgtttctatgtaatctaatggttgnnnnnnnctttcccatgataggaaacaactctccttttccatatt 265  Q
    ||||||||| ||||| ||||||||||||||||||| |  | |||||||||||||        |||||||||| ||||||| || |||| ||| ||| |||    
T  21811988 atatagtgtggacagtctatagtaagatcaatgttcccttttaatctaatggtttaaaatacctttcccatggtaggaaaaaagtctcatttcccaaatt 21811889  T
Q  266 aaac 269  Q
    ||||    
T  21811888 aaac 21811885  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 37105016 - 37105069
Alignment:
Q  166 atatagtgtagacagactatagtaagatcaatgtttctatgtaatctaatggtt 219  Q
    ||||||||| ||||| ||||||||||||||||||| |  | |||||||||||||    
T  37105016 atatagtgtggacagtctatagtaagatcaatgttcccttttaatctaatggtt 37105069  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 44384610 - 44384570
Alignment:
Q  179 agactatagtaagatcaatgtttctatgtaatctaatggtt 219  Q
    |||||||| || ||||||||||||||| |||||||||||||    
T  44384610 agactataatatgatcaatgtttctatttaatctaatggtt 44384570  T

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Target: scaffold0129 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 43219 - 43267
Alignment:
Q  228 ctttcccatgataggaaacaactctccttttccatattaaaccccacca 276  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  43219 ctttcccatgatgggaaacaactccccttttccatactaaaccccacca 43267  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 41706767 - 41706688
Alignment:
Q  139 taggtaggttgaagacaagttataaagatatagtgtagacagactatagtaagatcaatgtttctatgtaatctaatggt 218  Q
    |||| |||||||||||||   | || |||||||||||| | ||| ||| |||||||||||||||| | ||||||||||||    
T  41706767 taggaaggttgaagacaaacaagaacgatatagtgtaggctgaccataataagatcaatgtttctctttaatctaatggt 41706688  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 28975387 - 28975340
Alignment:
Q  228 ctttcccatgataggaaacaactctccttttccatattaaaccccacc 275  Q
    |||| ||||||||||||||||||||||||| ||||  |||||||||||    
T  28975387 cttttccatgataggaaacaactctcctttcccatgctaaaccccacc 28975340  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 4301952 - 4301905
Alignment:
Q  228 ctttcccatgataggaaacaactctccttttccatattaaaccccacc 275  Q
    |||||||||||| ||||| ||||  |||||||||||||||||||||||    
T  4301952 ctttcccatgatgggaaagaacttcccttttccatattaaaccccacc 4301905  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 12201424 - 12201377
Alignment:
Q  228 ctttcccatgataggaaacaactctccttttccatattaaaccccacc 275  Q
    ||||| |||| ||||||||||||||||||| ||||| |||||||||||    
T  12201424 ctttctcatggtaggaaacaactctcctttcccatactaaaccccacc 12201377  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 2458293 - 2458346
Alignment:
Q  166 atatagtgtagacagactatagtaagatcaatgtttctatgtaatctaatggtt 219  Q
    ||||||||| ||||| ||||||||||||||||||| |  | |||||||||||||    
T  2458293 atatagtgtggacagtctatagtaagatcaatgttcccttttaatctaatggtt 2458346  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 41261891 - 41261938
Alignment:
Q  228 ctttcccatgataggaaacaactctccttttccatattaaaccccacc 275  Q
    |||||||||| ||||||||||||||| ||| ||||| |||||||||||    
T  41261891 ctttcccatggtaggaaacaactctcatttcccatactaaaccccacc 41261938  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 219
Target Start/End: Complemental strand, 37275197 - 37275144
Alignment:
Q  166 atatagtgtagacagactatagtaagatcaatgtttctatgtaatctaatggtt 219  Q
    ||||||||| ||||| ||||||||||||||||||| |  | |||||||||||||    
T  37275197 atatagtgtggacagtctatagtaagatcaatgttcccttttaatctaatggtt 37275144  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 39862822 - 39862871
Alignment:
Q  170 agtgtagacagactatagtaagatcaatgtttctatgtaatctaatggtt 219  Q
    ||||| ||||| |||||||||||||||||||||| | ||||||| |||||    
T  39862822 agtgtggacagtctatagtaagatcaatgtttctttttaatctattggtt 39862871  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 43790430 - 43790471
Alignment:
Q  228 ctttcccatgataggaaacaactctccttttccatattaaac 269  Q
    |||||||||||||||||| ||||  |||||||||||||||||    
T  43790430 ctttcccatgataggaaagaacttcccttttccatattaaac 43790471  T

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