View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21260_high_6 (Length: 458)
Name: NF21260_high_6
Description: NF21260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21260_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Original strand, 45130606 - 45131032
Alignment:
| Q |
16 |
gtttctactatgtgcgtgtgtatgtatatgttctagtgttgtatttctttggtgtaagagacagaacactatagaaaataagcaaataatgaatgtagaa |
115 |
Q |
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| T |
45130606 |
gtttctactatgtgcgtgtgtatgtatatgttctagtgttgtatttctttggtgtaagagacagaacactatagaaaataagcaaataatgaatgtagaa |
45130705 |
T |
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| Q |
116 |
gttccaacaccaacaagatcaccagggtcatggatttatggttcagaaagagagcttgaaagccttcctcatcaatctttggtgcaagctaccaatgtac |
215 |
Q |
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| T |
45130706 |
gttccaacaccaacaagatcaccagggtcatggatttatggttcagaaagagagcttgaaagccttcctcatcaatctttgctgcaagctaccaatgtac |
45130805 |
T |
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| Q |
216 |
attttggtgcaagacctgatctcaaaagtaagtgaggcggggtaattttatatatattattgagnnnnnnnnnnattgttgtgtgtaaattgggtatcct |
315 |
Q |
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| T |
45130806 |
attttggtgcaagacctgatctcaagagtaagtgaggcggggtaattttatatatattattgag--ttttttttattgttgtgtgtaaattgggtatcct |
45130903 |
T |
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| Q |
316 |
ccatacgcagctgcagagactaatatcttttaccatgttgattgtatgaacaggacagtgatatataaaatttgttaattttgcagaaattctgtttgag |
415 |
Q |
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| T |
45130904 |
ccatacgcagctgcagagactaatatcttttaccatgtcgattgtatcaacgggacaatgatatataaaatttgttaattttgcagaaattctgtttgag |
45131003 |
T |
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| Q |
416 |
tgtaaagacaaagatgttggagttatggt |
444 |
Q |
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| T |
45131004 |
tgtaaagacaaagatgttggagttatggt |
45131032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 36 - 264
Target Start/End: Original strand, 45113722 - 45113950
Alignment:
| Q |
36 |
tatgtatatgttctagtgttgtatttctttggtgtaagagacagaacactatagaaaataagcaaataatgaatgtagaagttccaacaccaacaagatc |
135 |
Q |
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| T |
45113722 |
tatgtatatgttctagtgttgtttttctttggttgaagagattaaacaaattagaaaataagcatataatgaatgtagaagtttcaacaccagcaagatc |
45113821 |
T |
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| Q |
136 |
accagggtcatggatttatggttcagaaagagagcttgaaagccttcctcatcaatctttggtgcaagctaccaatgtacattttggtgcaagacctgat |
235 |
Q |
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| T |
45113822 |
accagggtcatggatttatggttcagaaagagagcttgagagccttcctcatcaatctttagtgcaagctaccaatgtacattttggctcaagacctgat |
45113921 |
T |
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| Q |
236 |
ctcaaaagtaagtgaggcggggtaatttt |
264 |
Q |
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| T |
45113922 |
ctcaagagtaagtgaggcagggtaatttt |
45113950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 384 - 442
Target Start/End: Original strand, 45114071 - 45114129
Alignment:
| Q |
384 |
aatttgttaattttgcagaaattctgtttgagtgtaaagacaaagatgttggagttatg |
442 |
Q |
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| T |
45114071 |
aatttgttaattttgcagaaattctgtttgagtgtgaaggcaaagatgttggagttatg |
45114129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 11593380 - 11593427
Alignment:
| Q |
201 |
aagctaccaatgtacattttggtgcaagacctgatctcaaaagtaagt |
248 |
Q |
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| T |
11593380 |
aagctaccaatgtgcattatggtgaaagacctgatcttaaaagtaagt |
11593427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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