View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21260_high_8 (Length: 376)
Name: NF21260_high_8
Description: NF21260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21260_high_8 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 161 - 376
Target Start/End: Complemental strand, 3939071 - 3938861
Alignment:
| Q |
161 |
gagagttttgagtaggggaaaatctaactgaggacagatatacattttcagtgacttcaacttgagaaccacaaggttcctgcaattaaaaacagtggaa |
260 |
Q |
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| T |
3939071 |
gagagttttgagtaggggaaaatctaactgaggacagatatacattttcagtgacttcaacttgagaaccacaaggttcctgcaattaaaaacagtggaa |
3938972 |
T |
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| Q |
261 |
attataggatccaatcggatttgaaaatcatcatcagtgccagacaagtctaaggtaaggtaagattatcaattcctcgttttacagcaacagaaatgaa |
360 |
Q |
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| T |
3938971 |
attataggatccaatcggatttgaaaatcatcatcagtgccagacaagtctaagg-----taagattatcaattcctcgttttacagcaacagaaatgaa |
3938877 |
T |
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| Q |
361 |
tcgattgatatcatat |
376 |
Q |
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| T |
3938876 |
tcgattgatatcatat |
3938861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 3939407 - 3939321
Alignment:
| Q |
14 |
agacaaacattagaatttaaagtgaagtttgacaattattgtaaatttagctagtgagaagtgacactcataccagttcaaaacgaa |
100 |
Q |
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| T |
3939407 |
agacaaacattagaatttaaagtgaagtttgacaattattgtaactttagctagtgagaagtgacactcataccagaccaaaacgaa |
3939321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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