View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21260_low_12 (Length: 308)

Name: NF21260_low_12
Description: NF21260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21260_low_12
NF21260_low_12
[»] chr7 (1 HSPs)
chr7 (1-308)||(39944458-39944774)


Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 39944458 - 39944774
Alignment:
Q  1 accaccacaaaacattgaccctccacaaccaccacaatcttcaccaataaatgatcctcaagta---------caatcaccgattagtcatcctctacaa 91  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||    
T  39944458 accatcacaaaacattgaccctccacaaccaccacaatcttcaccaataaatgatcctcaagtacaactagtacaatcaccgattagtcatcctctacaa 39944557  T
Q  92 ctaacaattcattcaccacccaacagtccctcacaaccaccatctcacaatccctcaccaaccaatgagcctcaacatccacaatcaccatcaccacaca 191  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39944558 ctaacaaatcattcaccacccaacagtccctcacaaccaccatctcacaatccctcaccaaccaatgagcctcaacatccacaatcaccatcaccacaca 39944657  T
Q  192 atgatcctacacaagaaattacacattcatcaccaggcctcaatcctctacaaccaccaccgccattctcaccaagtgacgacccttcaccaacaccaag 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39944658 atgatcctacacaagaaattacacattcatcaccaggcctcaatcctctaccaccaccaccgccattctcaccaagtgacgacccttcaccaacaccaag 39944757  T
Q  292 catagctaatgaacaac 308  Q
    |||||||||||||||||    
T  39944758 catagctaatgaacaac 39944774  T

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