View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21260_low_20 (Length: 254)
Name: NF21260_low_20
Description: NF21260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21260_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 24846935 - 24846708
Alignment:
| Q |
11 |
catcttacaataaattaatacctgtataacatgaatacaatttctacttcttgcacgtnnnnnnngattataaatatcttacaactagttcacattttga |
110 |
Q |
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| T |
24846935 |
catcttacaataaattaatacatgtctaacatgtattcaatttctacttcttgcacgtcaaaaaagattataaatatcttacaaccagttcacattttga |
24846836 |
T |
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| Q |
111 |
attttataaacaataatggatagtttcaagttttaagtgatttaaacgcttaagcaaatggttaggttttcgattaataactcttggatatatatatgtc |
210 |
Q |
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| T |
24846835 |
attttataaacaataatggatag-ttcaagttgtaagtgatttaaac------gcaaatggtcaggttttcgattaataactcttggatatatatatgtc |
24846743 |
T |
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| Q |
211 |
ccacata----ttactttatatagattaaaaactg |
241 |
Q |
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| T |
24846742 |
ccacatattacttactttacatagattaaaaactg |
24846708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 24837740 - 24837555
Alignment:
| Q |
16 |
tacaataaattaatacctgtataacatgaata--caatttctacttcttgcacgtnnnnnnngattataaatatcttacaactagttcacattttgaatt |
113 |
Q |
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|||||||||||||||| ||| ||||||| ||| ||||||||||||| ||| ||| ||||||||||||||| ||| |||||||||||||| || |
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| T |
24837740 |
tacaataaattaatacatgtctaacatgtatattcaatttctacttcctgctcgtcaaaaaa-attataaatatcttaaaaccagttcacattttgagtt |
24837642 |
T |
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| Q |
114 |
ttataaacaataatggatagtttcaagttttaagtgatttaaacgcttaagcaaatggttaggttttcgattaataactcttggatat |
201 |
Q |
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|||| ||||||||||||||| ||| |||| |||| ||||||||| ||||| ||||||| | ||||||||| | |||||||| ||||| |
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| T |
24837641 |
ttatcaacaataatggatag-ttctagttgtaagggatttaaacccttaaataaatggtcatgttttcgatcattaactcttagatat |
24837555 |
T |
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