View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21260_low_27 (Length: 209)

Name: NF21260_low_27
Description: NF21260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21260_low_27
NF21260_low_27
[»] chr4 (1 HSPs)
chr4 (15-107)||(10005803-10005895)
[»] chr7 (2 HSPs)
chr7 (34-107)||(16755322-16755395)
chr7 (52-90)||(16755419-16755457)
[»] chr8 (1 HSPs)
chr8 (13-107)||(44001462-44001557)
[»] chr3 (1 HSPs)
chr3 (48-92)||(30774968-30775012)


Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 10005895 - 10005803
Alignment:
Q  15 cagagacgaaaactcatagaaaagtgatgggtttggttaagttacattgattggtggaacgtggaattggaaatcatcacttcccacgatgca 107  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10005895 cagagacgaaaacttatagaaaagtgatgggtttggttaagttacattgattggtggaatgtggaattggaaatcatcacttcccacgatgca 10005803  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 16755395 - 16755322
Alignment:
Q  34 aaaagtgatgggtttggttaagttacattgattggtggaacgtggaattggaaatcatcacttcccacgatgca 107  Q
    |||||| |||||||||| ||||||||||||||| |||||  ||||||||||||||||||||||| ||| |||||    
T  16755395 aaaagttatgggtttggctaagttacattgattagtggagtgtggaattggaaatcatcacttcacacaatgca 16755322  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 16755457 - 16755419
Alignment:
Q  52 taagttacattgattggtggaacgtggaattggaaatca 90  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  16755457 taagttacattgattagtggaatgtggaattggaaatca 16755419  T

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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 44001557 - 44001462
Alignment:
Q  13 agcagagacgaaaactcatagaaaag-tgatgggtttggttaagttacattgattggtggaacgtggaattggaaatcatcacttcccacgatgca 107  Q
    ||||||||| |||||| | ||||||| ||||  |||||| |||||||||||||||| ||||| |||||| || ||||||||||||| |||||||||    
T  44001557 agcagagacaaaaacttacagaaaaggtgatacgtttggctaagttacattgattgatggaatgtggaactgaaaatcatcacttcacacgatgca 44001462  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 30774968 - 30775012
Alignment:
Q  48 tggttaagttacattgattggtggaacgtggaattggaaatcatc 92  Q
    ||||| ||||||||||||||| |||  ||||||||||||||||||    
T  30774968 tggttcagttacattgattggaggagtgtggaattggaaatcatc 30775012  T

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