View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21261_low_2 (Length: 516)
Name: NF21261_low_2
Description: NF21261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21261_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Original strand, 43765380 - 43765875
Alignment:
| Q |
1 |
ataagaccctacgagagaccataaataaggcttgttgccccaattgtggggtccccaccacaaatagagatggtaccatggcaactgaagaacaacaact |
100 |
Q |
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| T |
43765380 |
ataagaccctacgagagaccataaataaggcttgttgccccaattgtggggtccccaccacaaatagagatggtaccatggcaactgaagaacaacaact |
43765479 |
T |
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| Q |
101 |
acgtattgaaaatgccaaactcaaagctgaggttatgattagaattaactcaaactatacaacatcactttttaattacactattggnnnnnnn--ttat |
198 |
Q |
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| T |
43765480 |
acgtattgaaaatgccaaactcaaagctgaggttatgattagaattaactcaaactatacaacatcactttttaattacactattggaaaaaaaaattat |
43765579 |
T |
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| Q |
199 |
actagttagacaaattgtaaaccgaacttcccgtaagattagcatagttggtaaggacaatgttacgcaaggtctggggttcgaaacctgaacaccgaca |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||| |||||||||| ||| |
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| T |
43765580 |
actagttagacaaattgtaaaccgaacttcccgtaagattaacatagttggtaaggacaatgttatgcaaggttcggggttcgaaccctgaacaccaaca |
43765679 |
T |
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| Q |
299 |
aaaaagattgtaaaccgaacgatatatgcattgtccatataactttatttgattaataatatatttcatattttttagctagtagtttatcatgtctatt |
398 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43765680 |
aaaaagattgtaaaccgaacaatata--cattgtccatataactatatttgat---taatatatttcatattttttagctagtagtttatcatgtctatt |
43765774 |
T |
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| Q |
399 |
aannnnnnnaacaataaaaattaaattatatagattgaaaaatgacactctaaattgacacatgtgtaggtagagaggctgagagcagctttagggaaat |
498 |
Q |
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| T |
43765775 |
aatttttttaacaataaaaattaaat--tatagattgaaaaatgacactctaaattgacacatgtgtaggtagagaggctgagagcagctttagggaaat |
43765872 |
T |
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