View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21261_low_9 (Length: 212)
Name: NF21261_low_9
Description: NF21261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21261_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 42964624 - 42964444
Alignment:
| Q |
16 |
catcaatttcaaccaccaacacaaatgatggttatgactacataatagtaggtggtggaacagcagggtgccctttagctgtaaccctctcacaaaactt |
115 |
Q |
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| T |
42964624 |
catcaatttcaaccaccaacacaaatgatggttatgactacataatagtaggtggtggaacagcagggtgccctttagctgcaaccctctcacaaaactt |
42964525 |
T |
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| Q |
116 |
caatgttttgttgcttgaaagaggaggagtacctttcacaaaccccaatgtgtcatttcttgacaactttcacattacttt |
196 |
Q |
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| T |
42964524 |
caatgttttgttgcttgaaagaggaggagtacctttcacaaaccccaatgtgtcatttcttgacaactttcacattacttt |
42964444 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 193
Target Start/End: Original strand, 5499447 - 5499593
Alignment:
| Q |
47 |
ttatgactacataatagtaggtggtggaacagcagggtgccctttagctgtaaccctctcacaaaacttcaatgttttgttgcttgaaagaggaggagta |
146 |
Q |
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| T |
5499447 |
ttatgattacataatagtgggaggtggaactgcagggtgtcctttagctgcaacattatctcaaaactttagtgtattagtacttgaaagaggtggtgtt |
5499546 |
T |
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| Q |
147 |
cctttcacaaaccccaatgtgtcatttcttgacaactttcacattac |
193 |
Q |
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| T |
5499547 |
cctttcactaatccaaatgtaacatttcttgagaacttccatattac |
5499593 |
T |
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