View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21262_low_1 (Length: 438)
Name: NF21262_low_1
Description: NF21262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21262_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 43477544 - 43477118
Alignment:
| Q |
18 |
aacttagccttatctgttagaggattggatctaaattagctagctagccctatccattatattcaatatattttgtcataatcgctttcttat----cat |
113 |
Q |
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| T |
43477544 |
aacttagccttatctgttagaggattggatctaaattagctagctagccctatccattatattcaatatattttgtcataatcgctttcttaattaccat |
43477445 |
T |
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| Q |
114 |
acaataatgattctatttgtcttcagaatctaggttaacccttcgttaagaatgtctttgttttttgaaaagaaaagaatgtcttagttgttagttagtg |
213 |
Q |
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| T |
43477444 |
acaataatgattctatttgtcttcagaatctaggttaacccttcgttaagaatgtctttgttttttgaaaagaaaagaatgtcttagttgttagttagtg |
43477345 |
T |
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| Q |
214 |
gaaaatacatgagattgttcattataatta-----------aacggattttgttttagttatgagtatgactattagattgagcaaaagtttaccagctc |
302 |
Q |
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| T |
43477344 |
gaaaatacatgagattgttcattataattaagtttttttttaacggattttgttttagttatgagtatgactattagattgagcaaaagtttaccagctc |
43477245 |
T |
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| Q |
303 |
aataatcattaagccacgcagacctaccttgtatttcttttggcttttttatcaaatctttttggacaatactatgcttttatctgaaatttggataaag |
402 |
Q |
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| T |
43477244 |
aataatcattaagccacgcagacctaccttgtatttcttttggcttttttatcaaatctttttggacaatactatgcttttatctgaaatttggataaag |
43477145 |
T |
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| Q |
403 |
atgcatattattgattatcacctttgc |
429 |
Q |
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| T |
43477144 |
atgcatattattgattatcacccttgc |
43477118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 43468363 - 43468316
Alignment:
| Q |
128 |
atttgtcttcagaatctaggttaacccttcgttaagaatgtctttgtt |
175 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||| |||| |
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| T |
43468363 |
atttgtcttcagaacctaggttaacccttctttaagaatgtctgtgtt |
43468316 |
T |
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