View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21262_low_2 (Length: 257)
Name: NF21262_low_2
Description: NF21262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21262_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 64 - 241
Target Start/End: Complemental strand, 39425185 - 39425006
Alignment:
| Q |
64 |
tgcatcgtataaagttgatcgcatagatccaatttgcaaatcatcatgccgtcatctaagctatttctaaagattttat--ttttgtaagttgtttaatg |
161 |
Q |
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| T |
39425185 |
tgcatcgtataaagttgatcacatagatccaatttgcaaatcatcatgccgtcatctaagctatttctaaagattttatttttttttaagttatttagtg |
39425086 |
T |
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| Q |
162 |
gctagaaatccacattttttgatgaataagtgaaatgtttgaagttcgaaccaccaactcttacatatattatacaaagt |
241 |
Q |
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| T |
39425085 |
gctataaatccaccttttttgatgaataagttaaatgtttgaagttcgaaccaccaactcctacatatattatacaaagt |
39425006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 29321621 - 29321673
Alignment:
| Q |
160 |
tggctagaaatccacattttttgatgaataagtgaaatgtttgaagttcgaac |
212 |
Q |
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| T |
29321621 |
tggctagaaattcacttttttaaatgaataagtgaagtgattgaagttcgaac |
29321673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 214
Target Start/End: Complemental strand, 30350595 - 30350565
Alignment:
| Q |
184 |
tgaataagtgaaatgtttgaagttcgaacca |
214 |
Q |
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| T |
30350595 |
tgaataagtgaaatgtttgaagttcgaacca |
30350565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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