View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21263_high_1 (Length: 944)
Name: NF21263_high_1
Description: NF21263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21263_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 222 - 567
Target Start/End: Complemental strand, 14944528 - 14944183
Alignment:
| Q |
222 |
tattagcctaaaaaacttgacttagtttaataaatcgaaaacccaaataatttagccaacccaaagccaaattttattcatttcctccaatctcaaagtt |
321 |
Q |
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| T |
14944528 |
tatttgcctaaaaaacttgacttagtttaataaatcgaaaacccaaataatttagccaacccaaagccaaattttattcatttcctccaatctcaacgtt |
14944429 |
T |
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| Q |
322 |
gaatcttaataattccacgttgtcatcatcaatgcatgtcgacacacactttctttctctgactctacgtaccttcaaaagcaccttccctttccatatt |
421 |
Q |
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| T |
14944428 |
gaatcttaataattccacgttgtcatcatcaatgcatgtcgacacacactttctttctctgactctacgtaccttcaaaagcaccttccctttccatatt |
14944329 |
T |
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| Q |
422 |
tatcgtccacgcgtcactttctcagtaccctcctttcacatgatccaaaaatcacacgtgtcgccatgtaaaaatctcacacactaaatcttcatcaaat |
521 |
Q |
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||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14944328 |
tatcgtccacgcgtcactttctcagcacccacctttcacacgatccaaaaatcacacgtgtcgccatgtaaaaatctcacacactaaatcttcatcaaat |
14944229 |
T |
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| Q |
522 |
cgtcttccaacacgtgtccctccttttcccttcctataaatacccg |
567 |
Q |
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| T |
14944228 |
catcttccaacacgtgtccctccttttcccttcctataaatacccg |
14944183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 636 - 930
Target Start/End: Complemental strand, 14944098 - 14943804
Alignment:
| Q |
636 |
ttttaactattttctttttgtcgttttccattttctacatgatcctaacagaaaacgggtcgggtcgtcggatactgaactttccggcggttcatccatg |
735 |
Q |
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| T |
14944098 |
ttttaactattttctttttgtcgttttccattttctacatgatcctaacagaaaacgggtcgggtcgtcggatattgaactttccggcggttcatccatg |
14943999 |
T |
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| Q |
736 |
tataaacattgcttcctccacccttctatcttccctcatcaatctctccgacaagatttccaatttccaacacaaattcttctcatccaacaaacgaaat |
835 |
Q |
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| T |
14943998 |
tataaacattgcttcctccacccttctatcttccctcatcaatctctccgacaagatttccaatttccaacacaaattcttctcatccaacaaacgaaat |
14943899 |
T |
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| Q |
836 |
gcgagaaaagcgattcgtttgattggtcttcttcaacctttcctccatgagatcttagagaatcattcaaatcttccggctccggtgaccctttg |
930 |
Q |
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| T |
14943898 |
gctagaaaagccattcgtttgattggtcttcttcaacctttcctccatgagatcttagagaatcattcaaatcttccggctccggtgaccctttg |
14943804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 14944786 - 14944566
Alignment:
| Q |
18 |
ttttttcccttaaatatatgatcttttaaaatcatatttttatgtatgaaacttctgatagttttaatggatctttcgtttatgaaatttctgatagttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14944786 |
ttttttcccttaaatatatgatcttttaaaatcatatttttatgtatgaaacttctgatagttttaatggatctttcgtttatgaaatttctgatagttt |
14944687 |
T |
|
| Q |
118 |
ggtacgtagggggcatgtgaaagg---tatttttggaaattcatattttaggaggggagtccttctctatgagctcaaggtcaaatagtgacttgccatt |
214 |
Q |
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| T |
14944686 |
ggtacgtagggggcatgtgaaaggtattatttttggaaattcatattttaggaggggagtccttctctatgagctcaaggtcaaatagtcacttgccatt |
14944587 |
T |
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| Q |
215 |
aattttttattagcctaaaaa |
235 |
Q |
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|||||||||||| | |||||| |
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| T |
14944586 |
aattttttattaacttaaaaa |
14944566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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