View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21263_high_11 (Length: 291)

Name: NF21263_high_11
Description: NF21263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21263_high_11
NF21263_high_11
[»] chr3 (2 HSPs)
chr3 (9-291)||(11688871-11689153)
chr3 (9-288)||(9315295-9315574)


Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 291
Target Start/End: Complemental strand, 11689153 - 11688871
Alignment:
Q  9 atgaaaaatctaactgtcagtacgaatgattccttgtccagcttactcgaacatgcttctaagaatgattttgaacaatttaagatagctttagacagtg 108  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11689153 atgaaaaatctaactgtcactacgaatgattccttgtccagcttactcgaacatgcttctaagaatgattttgaacaatttaagatagctttagacagtg 11689054  T
Q  109 atgccttgctgttacttgaagtcggcgcctggtgtgtccgtaaaaatggacataaccaaattgttctcgaggacagaaccgctttgatggtggcagcatc 208  Q
    |||| | |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11689053 atgcgtcgctgttacttgaagtcggggcctggtgtgtccgtcaaaatggacataaccaaattgttcttgaggacagaaccgctttgatggtggcagcatc 11688954  T
Q  209 ctgtgggagtattgatattttaaagcttatactttcatgttccgaggctggtgtaaatttttcttgtgggactgataaaacca 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  11688953 ctgtgggagtattgatattttaaagcttatactttcatgttccgaggctggtgtaaattttacttgcgggactgataaaacca 11688871  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 9 - 288
Target Start/End: Complemental strand, 9315574 - 9315295
Alignment:
Q  9 atgaaaaatctaactgtcagtacgaatgattccttgtccagcttactcgaacatgcttctaagaatgattttgaacaatttaagatagctttagacagtg 108  Q
    |||||||||||||||||  ||||  ||||||| || ||||||||||| |||||||||||||| |||||||||||| | || ||| ||||| |||| ||||    
T  9315574 atgaaaaatctaactgttcgtactgatgattctttttccagcttacttgaacatgcttctaacaatgattttgaagatttcaaggtagctctagatagtg 9315475  T
Q  109 atgccttgctgttacttgaagtcggcgcctggtgtgtccgtaaaaatggacataaccaaattgttctcgaggacagaaccgctttgatggtggcagcatc 208  Q
    |||| |  ||  |   |||||| |||  ||||| ||||||| |||| |||  ||||||||||||||| ||| || ||||| |||| |||||||| || ||    
T  9315474 atgcttcacttattaatgaagttggcttctggtatgtccgtcaaaagggatctaaccaaattgttcttgagcaccgaacccctttaatggtggctgcttc 9315375  T
Q  209 ctgtgggagtattgatattttaaagcttatactttcatgttccgaggctggtgtaaatttttcttgtgggactgataaaa 288  Q
    || |||||||||||||||| ||||||||||||| |||| | ||||||||| ||| ||||| || ||||| ||||||||||    
T  9315374 ctatgggagtattgatattctaaagcttatactctcatatcccgaggctgatgttaatttctcctgtggaactgataaaa 9315295  T

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