View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21263_high_12 (Length: 283)
Name: NF21263_high_12
Description: NF21263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21263_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 24383537 - 24383263
Alignment:
| Q |
1 |
gatcaacgaatacccaactaaactacttatgggcaaataattaaccatgagacgactgttcatgcgagaagtgtattcttcgtctatcagcaataagttt |
100 |
Q |
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| T |
24383537 |
gatcaacgagtgcccaactaaactacttatgggcaaataattaaccatgagacgactgttcatgcgagaagtgtattcttcgtctatcagcaataagttt |
24383438 |
T |
|
| Q |
101 |
ttgttttgttcagatttcttttggtgaatttttataaatttagggttagtgactaaagcattccaagacttgcaaacgcacctgaatcgcgtaagaaatt |
200 |
Q |
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| T |
24383437 |
ttgttttgttcagatttcttttggtgaatttttataaatttagggttagagactaaagcattccaagacttgcaaacgcgcctaaatcgtgtaagaaatt |
24383338 |
T |
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| Q |
201 |
tcacggtaaggaacgataagacttcaatgataagatcctccggaagaaataccggtggtgatggcaacttcatat |
275 |
Q |
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| T |
24383337 |
tcacggtaaggaactataagacttcaatgataagatcgtccggaagaaataccggtggtgatggcaacttcatat |
24383263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 100 - 263
Target Start/End: Complemental strand, 24390725 - 24390562
Alignment:
| Q |
100 |
tttgttttgttcagatttcttttggtgaatttttataaatttagggttagtgactaaagcattccaagacttgcaaacgcacctgaatcgcgtaagaaat |
199 |
Q |
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| T |
24390725 |
tttgtttcgctcagatttcttttggtgaattttgataaaattagggctatcgattagagcattccatgacttgcaaacgcacctgaatcgcataagaagt |
24390626 |
T |
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| Q |
200 |
ttcacggtaaggaacgataagacttcaatgataagatcctccggaagaaataccggtggtgatg |
263 |
Q |
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| T |
24390625 |
ttcacggtaaggaatgataacacttcacagacaagttcatctgggagaattaccggtggagatg |
24390562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 100 - 237
Target Start/End: Complemental strand, 24384500 - 24384363
Alignment:
| Q |
100 |
tttgttttgttcagatttcttttggtgaatttttataaatttagggttagtgactaaagcattccaagacttgcaaacgcacctgaatcgcgtaagaaat |
199 |
Q |
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||||||| |||||||||| ||| ||||||| || ||||| ||||| ||| || || || |||||| ||||||||||||||||| |||||| ||||| |
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| T |
24384500 |
tttgtttcgttcagatttgtttcggtgaatcttgataaaactagggctagagattagagaattccacgacttgcaaacgcacctaaatcgcataagatga |
24384401 |
T |
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| Q |
200 |
ttcacggtaaggaacgataagacttcaatgataagatc |
237 |
Q |
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| T |
24384400 |
ttcacggtaaggaatgataacacttcaaagataagatc |
24384363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 100 - 265
Target Start/End: Original strand, 24956297 - 24956466
Alignment:
| Q |
100 |
tttgttttgttcagatttcttttggtgaatttttataaatttagggttagtgactaaagcattccaagacttgcaaacgcacctgaatcgcg----taag |
195 |
Q |
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||||||| |||||| |||||||||||||||||| |||||||||||||||| || || |||||||||| |||||||||| |||||||||||| |||| |
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| T |
24956297 |
tttgtttcgttcaggtttcttttggtgaattttaataaatttagggttagagattagagcattccaatacttgcaaacacacctgaatcgcacgcataag |
24956396 |
T |
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| Q |
196 |
aaatttcacggtaaggaacgataagacttcaatgataagatcctccggaagaaataccggtggtgatggc |
265 |
Q |
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| T |
24956397 |
aggtttcacggtaaggaaagatagtacctcaaggataagatcgtcggggataaataccgatggcgatggc |
24956466 |
T |
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