View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21263_high_13 (Length: 282)

Name: NF21263_high_13
Description: NF21263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21263_high_13
NF21263_high_13
[»] chr3 (12 HSPs)
chr3 (1-265)||(5501926-5502190)
chr3 (1-265)||(5489079-5489341)
chr3 (3-265)||(5524796-5525058)
chr3 (3-265)||(5803366-5803629)
chr3 (48-265)||(5453931-5454148)
chr3 (3-265)||(5483630-5483893)
chr3 (48-265)||(5445348-5445565)
chr3 (67-265)||(5849793-5849991)
chr3 (59-259)||(20342686-20342886)
chr3 (62-265)||(5829044-5829247)
chr3 (110-265)||(5854960-5855115)
chr3 (52-90)||(5855120-5855158)
[»] chr6 (2 HSPs)
chr6 (48-265)||(25810247-25810464)
chr6 (76-188)||(3979330-3979442)
[»] chr8 (5 HSPs)
chr8 (74-223)||(23392835-23392984)
chr8 (105-187)||(23341769-23341851)
chr8 (105-187)||(23385283-23385365)
chr8 (77-223)||(23285584-23285730)
chr8 (91-176)||(23189346-23189431)
[»] chr7 (1 HSPs)
chr7 (92-187)||(20279110-20279205)
[»] chr2 (2 HSPs)
chr2 (73-126)||(34218764-34218817)
chr2 (72-127)||(34207621-34207676)


Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 5501926 - 5502190
Alignment:
Q  1 tcttaagttagcatgggaactacattatgataaaactaaactaagagaaattaatttcgttggtgagaaagttcaaaccaaaaataaagtaatccaagct 100  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5501926 tcttaagttagcatgggaactatattatgacaaaactaaactaagagaaattaatttcgttggtgagaaagttcaaaccaaaaataaagtaatccaagct 5502025  T
Q  101 tctgttggccatgaattcatagatcaacaacttttcatcttgttgaatagaacaaccgagaagtttaacaagattacggtgttgaagtgttgccatcaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5502026 tctgttggccatgaattcatagatcaacaacttttcatcttgttgaatagaacaaccaagaagtttaacaagattacggtgttgaagtgttgccatcaag 5502125  T
Q  201 tttacttcatttttgaactcctcggttccttgtgcggatgttttagaaagcctcttaacagcaat 265  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  5502126 tttacttcatttttgaactcctcggttccttgtgccgatgttttagaaagccttttaacagcaat 5502190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 5489079 - 5489341
Alignment:
Q  1 tcttaagttagcatgggaactacattatgataaaactaaactaagagaaattaatttcgttggtgagaaagttcaaaccaaaaataaagtaatccaagct 100  Q
    |||||||||||||||||||||||||||||| || | ||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5489079 tcttaagttagcatgggaactacattatgacaagagtaaacaaaga--aattaatttcgttggtgagaaagttcaaaccaaaaataaagtaatccaagct 5489176  T
Q  101 tctgttggccatgaattcatagatcaacaacttttcatcttgttgaatagaacaaccgagaagtttaacaagattacggtgttgaagtgttgccatcaag 200  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||    
T  5489177 tctgttggccatgaattcatagatcaacaacttttcttcttgtcgaatagaacaaccaagaagttttacaagattacggtgttgaagcgttgccatcaag 5489276  T
Q  201 tttacttcatttttgaactcctcggttccttgtgcggatgttttagaaagcctcttaacagcaat 265  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5489277 tttacttcatttttgaactcctcggttccttgtgccgatgttttagaaagcctcttaacagcaat 5489341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 3 - 265
Target Start/End: Original strand, 5524796 - 5525058
Alignment:
Q  3 ttaagttagcatgggaactacattatgataaaactaaactaagagaaattaatttcgttggtgagaaagttcaaaccaaaaataaagtaatccaagcttc 102  Q
    |||||||||||||||||||||||||||| || ||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5524796 ttaagttagcatgggaactacattatgacaagacttaacttagagaaattaatttggttggtgagaaagttcaaaccaaaaataaagtaatccaagcttc 5524895  T
Q  103 tgttggccatgaattcatagatcaacaacttttcatcttgttgaatagaacaaccgagaagtttaacaagattacggtgttgaagtgttgccatcaagtt 202  Q
    | |||| ||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| || ||||||||||||||||||||||||||||  ||    
T  5524896 tattgggcatgaattcgtagatcaacaacttttcatcttgtcgaatagaacagccgagaagttttactagattacggtgttgaagtgttgccatcatctt 5524995  T
Q  203 tacttcatttttgaactcctcggttccttgtgcggatgttttagaaagcctcttaacagcaat 265  Q
    ||||||||||||||||||||||| |||||||   ||||||||||  |||||||||||||||||    
T  5524996 tacttcatttttgaactcctcggatccttgtatcgatgttttagctagcctcttaacagcaat 5525058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 3 - 265
Target Start/End: Complemental strand, 5803629 - 5803366
Alignment:
Q  3 ttaagttagcatgggaactacattatgataaaactaaac-taagagaaattaatttcgttggtgagaaagttcaaaccaaaaataaagtaatccaagctt 101  Q
    |||| |||||||  |||||||||||||  || | ||||| | |||||||| || || ||||||| |||||||||||||||||||||||||||||||||||    
T  5803629 ttaatttagcattagaactacattatggcaagagtaaacctgagagaaataaaattggttggtgtgaaagttcaaaccaaaaataaagtaatccaagctt 5803530  T
Q  102 ctgttggccatgaattcatagatcaacaacttttcatcttgttgaatagaacaaccgagaagtttaacaagattacggtgttgaagtgttgccatcaagt 201  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||| || ||||||||||||||||||||||||||||| |    
T  5803529 ctgttgggcatgaattcatagatcaacaacttttcatcttgttgaatagaacagccaagaagttttactagattacggtgttgaagtgttgccatcaact 5803430  T
Q  202 ttacttcatttttgaactcctcggttccttgtgcggatgttttagaaagcctcttaacagcaat 265  Q
    |||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||    
T  5803429 ttacttcatttttgaactcctcggatccttgtcccgatgttttagaaagcctcttaacagcaat 5803366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 48 - 265
Target Start/End: Original strand, 5453931 - 5454148
Alignment:
Q  48 aaattaatttcgttggtgagaaagttcaaaccaaaaataaagtaatccaagcttctgttggccatgaattcatagatcaacaacttttcatcttgttgaa 147  Q
    |||| ||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  5453931 aaataaatttggttggtgtgaaagttcaaaccaaaaataaagcaatccaagcttctgttgggcatgaattcgtagatcaacaacttttcatcttgttgaa 5454030  T
Q  148 tagaacaaccgagaagtttaacaagattacggtgttgaagtgttgccatcaagtttacttcatttttgaactcctcggttccttgtgcggatgttttaga 247  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | |||||||||||    
T  5454031 tagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttccttgtcccgatgttttaga 5454130  T
Q  248 aagcctcttaacagcaat 265  Q
    ||||||||||||||||||    
T  5454131 aagcctcttaacagcaat 5454148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 3 - 265
Target Start/End: Original strand, 5483630 - 5483893
Alignment:
Q  3 ttaagttagcatgggaactacattatgataaaactaaac-taagagaaattaatttcgttggtgagaaagttcaaaccaaaaataaagtaatccaagctt 101  Q
    |||| |||||||| |||||||||||||  || | ||||| | |||||||| ||||| ||||||| |||||||||||||||||||||||| ||||||||||    
T  5483630 ttaacttagcatgagaactacattatggcaagagtaaacctgagagaaataaatttggttggtgtgaaagttcaaaccaaaaataaagttatccaagctt 5483729  T
Q  102 ctgttggccatgaattcatagatcaacaacttttcatcttgttgaatagaacaaccgagaagtttaacaagattacggtgttgaagtgttgccatcaagt 201  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||  |    
T  5483730 ctgttgggcatgaattcgtagatcaacaacttttcatcttgttgaatagaacaaccaagaagttttactagattacggtgttgaagtgttgccatcatct 5483829  T
Q  202 ttacttcatttttgaactcctcggttccttgtgcggatgttttagaaagcctcttaacagcaat 265  Q
    |||||||||||||||||||||||| |||||||   |||||||||||||||||||||||||||||    
T  5483830 ttacttcatttttgaactcctcggatccttgtctcgatgttttagaaagcctcttaacagcaat 5483893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 48 - 265
Target Start/End: Original strand, 5445348 - 5445565
Alignment:
Q  48 aaattaatttcgttggtgagaaagttcaaaccaaaaataaagtaatccaagcttctgttggccatgaattcatagatcaacaacttttcatcttgttgaa 147  Q
    |||| ||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||    
T  5445348 aaataaatttggttggtgtgaaagttcaaaccaaaaataaagaaatccaagcttctgttgggcatgaattcgtagatcaacatcttttcatcttgttgaa 5445447  T
Q  148 tagaacaaccgagaagtttaacaagattacggtgttgaagtgttgccatcaagtttacttcatttttgaactcctcggttccttgtgcggatgttttaga 247  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | |||||||||||    
T  5445448 tagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttccttgtcctgatgttttaga 5445547  T
Q  248 aagcctcttaacagcaat 265  Q
    ||||||||||||||||||    
T  5445548 aagcctcttaacagcaat 5445565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 67 - 265
Target Start/End: Complemental strand, 5849991 - 5849793
Alignment:
Q  67 gaaagttcaaaccaaaaataaagtaatccaagcttctgttggccatgaattcatagatcaacaacttttcatcttgttgaatagaacaaccgagaagttt 166  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5849991 gaaagttcaaaccaaaaataaagtaatccaagcttctgttgggcatgaattcatagatcaacaacttttcatcttgttgaatagaacaaccaagaagttt 5849892  T
Q  167 aacaagattacggtgttgaagtgttgccatcaagtttacttcatttttgaactcctcggttccttgtgcggatgttttagaaagcctcttaacagcaat 265  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||||||||   ||||||| | ||||| ||| |||||||||||||||||||    
T  5849891 tacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaactccttgtcccgatgtattacaaagcctcttaacagcaat 5849793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 59 - 259
Target Start/End: Original strand, 20342686 - 20342886
Alignment:
Q  59 gttggtgagaaagttcaaaccaaaaataaagtaatccaagcttctgttggccatgaattcatagatcaacaacttttcatcttgttgaatagaacaaccg 158  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||     
T  20342686 gttggtgtgaaaattcaaaccaaaaataaagaaatccaagcttctgttgggcatgaattcatagatcaacatcttttcatcttgttgaatagaacaacca 20342785  T
Q  159 agaagtttaacaagattacggtgttgaagtgttgccatcaagtttacttcatttttgaactcctcggttccttgtgcggatgttttagaaagcctcttaa 258  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||| | ||||||||||||||||||||||    
T  20342786 agaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcaattccttgtcccgatgttttagaaagcctcttaa 20342885  T
Q  259 c 259  Q
    |    
T  20342886 c 20342886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 62 - 265
Target Start/End: Complemental strand, 5829247 - 5829044
Alignment:
Q  62 ggtgagaaagttcaaaccaaaaataaagtaatccaagcttctgttggccatgaattcatagatcaacaacttttcatcttgttgaatagaacaaccgaga 161  Q
    |||| |||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||| | |    
T  5829247 ggtgtgaaagttcaaaccaaaaataaagtaatccaagcttctgtttggcatgaattcgtagatcaacaacttttcatcttgttgaatagaacaaccaaaa 5829148  T
Q  162 agtttaacaagattacggtgttgaagtgttgccatcaagtttacttcatttttgaactcctcggttccttgtgcggatgttttagaaagcctcttaacag 261  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| | ||||||||||| |||||||||||||    
T  5829147 agttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaattcctcagttccttgtcctgatgttttagatagcctcttaacag 5829048  T
Q  262 caat 265  Q
    ||||    
T  5829047 caat 5829044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 110 - 265
Target Start/End: Complemental strand, 5855115 - 5854960
Alignment:
Q  110 catgaattcatagatcaacaacttttcatcttgttgaatagaacaaccgagaagtttaacaagattacggtgttgaagtgttgccatcaagtttacttca 209  Q
    ||||||||  ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| | ||| ||||||||||||||||| || ||||||    
T  5855115 catgaattggtagatcaacaacttttcatcttggtgaatagaacaaccaagaagttttacaagatttctgtgctgaagtgttgccatcaacttcacttca 5855016  T
Q  210 tttttgaactcctcggttccttgtgcggatgttttagaaagcctcttaacagcaat 265  Q
    |||||||||||||||||||||||| | || |||||||| |||||||||||||||||    
T  5855015 tttttgaactcctcggttccttgtcctgaggttttagagagcctcttaacagcaat 5854960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 5855158 - 5855120
Alignment:
Q  52 taatttcgttggtgagaaagttcaaaccaaaaataaagt 90  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  5855158 taatttggttggtgtgaaagttcaaaccaaaaataaagt 5855120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 48 - 265
Target Start/End: Complemental strand, 25810464 - 25810247
Alignment:
Q  48 aaattaatttcgttggtgagaaagttcaaaccaaaaataaagtaatccaagcttctgttggccatgaattcatagatcaacaacttttcatcttgttgaa 147  Q
    |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||    
T  25810464 aaataaatttggttggtgtgaaagttcaaaccaaaaataaagtaatccaagcttctgttgggcatgaattcttagatcaacatcttttcatcttgttgaa 25810365  T
Q  148 tagaacaaccgagaagtttaacaagattacggtgttgaagtgttgccatcaagtttacttcatttttgaactcctcggttccttgtgcggatgttttaga 247  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | |||||||||||    
T  25810364 tagaacaaccaagaagttttacaagattacggtgttgaagtgttgccatcaactttacttcatttttgaactcctcagttccttgtcctgatgttttaga 25810265  T
Q  248 aagcctcttaacagcaat 265  Q
    ||||||||||||||||||    
T  25810264 aagcctcttaacagcaat 25810247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 188
Target Start/End: Original strand, 3979330 - 3979442
Alignment:
Q  76 aaccaaaaataaagtaatccaagcttctgttggccatgaattcatagatcaacaacttttcatcttgttgaatagaacaaccgagaagtttaacaagatt 175  Q
    ||||||||| |||||| ||||||||| |||||| |||| |||||||||||| ||   ||||  ||  || |||  | || || |||||||| ||||||||    
T  3979330 aaccaaaaacaaagtagtccaagcttttgttgggcatgtattcatagatcagcattgtttctcctccttcaatgcagcatccaagaagtttgacaagatt 3979429  T
Q  176 acggtgttgaagt 188  Q
    |||||||||||||    
T  3979430 acggtgttgaagt 3979442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 74 - 223
Target Start/End: Complemental strand, 23392984 - 23392835
Alignment:
Q  74 caaaccaaaaataaagtaatccaagcttctgttggccatgaattcatagatcaacaacttttcatcttgttgaatagaacaaccgagaagtttaacaaga 173  Q
    ||||||||| || ||||| || |||||| |||||| |||| ||||||| ||||| ||| |||| ||||  |||||  | ||||| ||||| || ||||||    
T  23392984 caaaccaaagatgaagtagtctaagcttttgttgggcatgtattcatatatcaataacatttcctctttatgaatgcagcaaccaagaagcttcacaaga 23392885  T
Q  174 ttacggtgttgaagtgttgccatcaagtttacttcatttttgaactcctc 223  Q
    ||||||||||||||| | || |||||    ||||||||||| ||||||||    
T  23392884 ttacggtgttgaagtttcgcaatcaacacaacttcatttttaaactcctc 23392835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 187
Target Start/End: Original strand, 23341769 - 23341851
Alignment:
Q  105 ttggccatgaattcatagatcaacaacttttcatcttgttgaatagaacaaccgagaagtttaacaagattacggtgttgaag 187  Q
    |||| |||| |||||||||||||||| ||||| |||   |||||| ||||||||||||| || |||||||||||||| |||||    
T  23341769 ttgggcatgtattcatagatcaacaatttttcctctctgtgaatacaacaaccgagaagcttcacaagattacggtgctgaag 23341851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 187
Target Start/End: Complemental strand, 23385365 - 23385283
Alignment:
Q  105 ttggccatgaattcatagatcaacaacttttcatcttgttgaatagaacaaccgagaagtttaacaagattacggtgttgaag 187  Q
    |||| |||| |||||||||||||||| ||||| |||   |||||| ||||||||||||| || |||||||||||||| |||||    
T  23385365 ttgggcatgtattcatagatcaacaatttttcctctctgtgaatacaacaaccgagaagcttcacaagattacggtgctgaag 23385283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 23285584 - 23285730
Alignment:
Q  77 accaaaaataaagtaatccaagcttctgttggccatgaattcatagatcaacaacttttcatcttgttgaatagaacaaccgagaagtttaacaagatta 176  Q
    |||||| || ||||| || || ||| |||||| |||| ||||||| ||||| ||| |||| |||   |||||  | ||||| ||||| || |||||||||    
T  23285584 accaaagatgaagtagtctaaacttttgttgggcatgtattcatatatcaataacatttcctctctatgaatgcagcaaccaagaagcttcacaagatta 23285683  T
Q  177 cggtgttgaagtgttgccatcaagtttacttcatttttgaactcctc 223  Q
    |||||||||||| |||| |||||    ||||||||||| ||||||||    
T  23285684 cggtgttgaagttttgcaatcaacacaacttcatttttaaactcctc 23285730  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 23189431 - 23189346
Alignment:
Q  91 aatccaagcttctgttggccatgaattcatagatcaacaacttttcatcttgttgaatagaacaaccgagaagtttaacaagatta 176  Q
    ||||||||||| | |||| ||||||||||||||| | ||  ||||||||| | | |||  |||| ||||||||| |||||||||||    
T  23189431 aatccaagcttttattgggcatgaattcatagataagcattttttcatctcgctcaatgcaacagccgagaagtctaacaagatta 23189346  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 20279205 - 20279110
Alignment:
Q  92 atccaagcttctgttggccatgaattcatagatcaacaacttttcatcttgttgaatagaacaaccgagaagtttaacaagattacggtgttgaag 187  Q
    |||||| ||| |||| | |||| | ||||| ||||||| |||||||||   || |||| ||||||| ||||||||||||||||| |||||||||||    
T  20279205 atccaaacttttgtttggcatgtactcatacatcaacatcttttcatcaccttcaatacaacaaccaagaagtttaacaagattgcggtgttgaag 20279110  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 34218817 - 34218764
Alignment:
Q  73 tcaaaccaaaaataaagtaatccaagcttctgttggccatgaattcatagatca 126  Q
    ||||||||||||| ||||| |||||||||||||||  |||||||||||| ||||    
T  34218817 tcaaaccaaaaatgaagtagtccaagcttctgttgatcatgaattcatatatca 34218764  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 34207676 - 34207621
Alignment:
Q  72 ttcaaaccaaaaataaagtaatccaagcttctgttggccatgaattcatagatcaa 127  Q
    |||||||||||||| ||||| ||||||||||||||   |||||||||||| |||||    
T  34207676 ttcaaaccaaaaatgaagtagtccaagcttctgtttatcatgaattcatatatcaa 34207621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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