View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21263_high_14 (Length: 271)
Name: NF21263_high_14
Description: NF21263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21263_high_14 |
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| [»] scaffold0036 (3 HSPs) |
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Alignment Details
Target: scaffold0036 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 21943 - 22187
Alignment:
| Q |
11 |
atgaaacacaaaattagggaattttgttatatcttcaaaggtgaagcaaaaggtatatggggattgaggatctttcacttcctcaacaccaataactccc |
110 |
Q |
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| T |
21943 |
atgaaacacaaaattagggaactttgttatatctccaaaggtgaagcaaaaggtatatggggatggaggatctttcacttcctcaacaccaataactccc |
22042 |
T |
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| Q |
111 |
ttcaaggaagctaccaaatcattgtaaaagttttgttcaagatatgtcaatgttgtccctgaatcaatgattatgttaccatcgattcgacctgtctcaa |
210 |
Q |
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| T |
22043 |
tttaaggaagctaccaaatcattgtaaaagttttgttcaagatacgtcaatgttgtccctgaatcaatgattatgttaccatcggttcgacctgtctcaa |
22142 |
T |
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| Q |
211 |
cagttttttgtccgatggtgatgccttcgagattgaggaagtaat |
255 |
Q |
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| T |
22143 |
cagttttttgtccgatggtgatgccttcgagattgaggaagtaat |
22187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 6 - 247
Target Start/End: Original strand, 13900 - 14141
Alignment:
| Q |
6 |
gtgagatgaaacacaaaattagggaattttgttatatcttcaaaggtgaagcaaaaggtatatggggattgaggatctttcacttcctcaacaccaataa |
105 |
Q |
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| T |
13900 |
gtgaaatgaaacacgaaattagggaactttgctagatctccaaaggtgaagcaaaaggtaaatggtgatggaggatcttttacttcctctacaccaataa |
13999 |
T |
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| Q |
106 |
ctcccttcaaggaagctaccaaatcattgtaaaagttttgttcaagatatgtcaatgttgtccctgaatcaatgattatgttaccatcgattcgacctgt |
205 |
Q |
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| T |
14000 |
ctcccttcaccgaagctatgaaatcgttataaaattttggttcaagatacgtcaatgttgtacctgaatcaatgattatattaccatcagtttgacctga |
14099 |
T |
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| Q |
206 |
ctcaacagttttttgtccgatggtgatgccttcgagattgag |
247 |
Q |
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| T |
14100 |
ctgagccgttttttgtccaacggtgataccttcgagattgag |
14141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 88 - 254
Target Start/End: Complemental strand, 41658 - 41492
Alignment:
| Q |
88 |
cttcctcaacaccaataactcccttcaaggaagctaccaaatcattgtaaaagttttgttcaagatatgtcaatgttgtccctgaatcaatgattatgtt |
187 |
Q |
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| T |
41658 |
cttcctcaagaccaatagcttccttcacggaagttacaaaatcatcgaaaaagggttgttcaagatacgtcaacgttgtccctgaatcaatgattatgtt |
41559 |
T |
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| Q |
188 |
accatcgattcgacctgtctcaacagttttttgtccgatggtgatgccttcgagattgaggaagtaa |
254 |
Q |
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| T |
41558 |
gccatcgatttgacctgtctgaattgttttttgtccaatagtaataccttcgaggttaacgaagtaa |
41492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 222
Target Start/End: Original strand, 26464184 - 26464326
Alignment:
| Q |
80 |
atctttcacttcctcaacaccaataactcccttcaaggaagctaccaaatcattgtaaaagttttgttcaagatatgtcaatgttgtccctgaatcaatg |
179 |
Q |
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| T |
26464184 |
atcttccacttcctcaatatcaataacttccttcaccgaagctaaaaaatcatcgaaaaagggttgttcgagatacatcaatgctgtccctgaatcaatg |
26464283 |
T |
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| Q |
180 |
attatgttaccatcgattcgacctgtctcaacagttttttgtc |
222 |
Q |
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| T |
26464284 |
attatgttgccatcaatttgacctgtctgaattgttttttgtc |
26464326 |
T |
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