View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21263_high_6 (Length: 466)
Name: NF21263_high_6
Description: NF21263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21263_high_6 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
| [»] scaffold0651 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0041 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 411
Target Start/End: Original strand, 91232 - 91605
Alignment:
| Q |
17 |
taagctcacaagatcaacgctagctgccaagggtgtagctacgtgttagagaggggtagctttggctaccaaaaaattatctttttatttgtattattaa |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
91232 |
taagctcacgagatcaacgctagctgccaagggtgtagttacatgtcagagaggggtagctttggctaccaaaaaattatctttttatttgtattattaa |
91331 |
T |
|
| Q |
117 |
atgtaatttatgtttagctacccctttaaaatatatttagccacttcagataagtttatttgtgtaaaattaagagaaataaaatactcaaaaagattac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
91332 |
atgtaatttatgtttagctacccctttaaaatatatttagccacttcagataagtttatttgtgtaaaattaagagaaataaaatactca---------- |
91421 |
T |
|
| Q |
217 |
cactttgtttaatagatttattttttcttattctgacatttttggtatttcaaacaactaaaaggagagcattgttagcaatgaaaattgtaaagataaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
91422 |
-------tttaatagatttattttttcttattctgacatttttggtatttcaaacaactaaaaggagagcattgttagcaatgaaaattgtaaagataaa |
91514 |
T |
|
| Q |
317 |
actatnnnnnnnnnnnnntcacttcattgtttccattgtaaacctatacaagttcaattacagatgatatgactctttgaagtgttgttgaacta |
411 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
91515 |
acta----aaaaaaaaaatcacttcattgtttccattgtaaacctatacaagttcaattacagatgatatgactctttgaagtgttgttgaacta |
91605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 411
Target Start/End: Complemental strand, 40875050 - 40874677
Alignment:
| Q |
17 |
taagctcacaagatcaacgctagctgccaagggtgtagctacgtgttagagaggggtagctttggctaccaaaaaattatctttttatttgtattattaa |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40875050 |
taagctcacgagatcaacgctagctgccaagggtgtagttacatgtcagagaggggtagctttggctaccaaaaaattatctttttatttgtattattaa |
40874951 |
T |
|
| Q |
117 |
atgtaatttatgtttagctacccctttaaaatatatttagccacttcagataagtttatttgtgtaaaattaagagaaataaaatactcaaaaagattac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40874950 |
atgtaatttatgtttagctacccctttaaaatatatttagccacttcagataagtttatttgtgtaaaattaagagaaataaaatactca---------- |
40874861 |
T |
|
| Q |
217 |
cactttgtttaatagatttattttttcttattctgacatttttggtatttcaaacaactaaaaggagagcattgttagcaatgaaaattgtaaagataaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40874860 |
-------tttaatagatttattttttcttattctgacatttttggtatttcaaacaactaaaaggagagcattgttagcaatgaaaattgtaaagataaa |
40874768 |
T |
|
| Q |
317 |
actatnnnnnnnnnnnnntcacttcattgtttccattgtaaacctatacaagttcaattacagatgatatgactctttgaagtgttgttgaacta |
411 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40874767 |
acta----aaaaaaaaaatcacttcattgtttccattgtaaacctatacaagttcaattacagatgatatgactctttgaagtgttgttgaacta |
40874677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 207
Target Start/End: Complemental strand, 29661679 - 29661542
Alignment:
| Q |
72 |
gtagctttggctacca-aaaaattatct-ttttatttgtattattaaatgtaatttatgtttagctacccctttaaaatatatttagccacttcagataa |
169 |
Q |
| |
|
||||||||| |||||| |||||| || | |||||||||||| ||||| |||| | |||||||||||| | |||| |||||||| ||| || |||| |
|
|
| T |
29661679 |
gtagctttgtctaccacaaaaatcatttcttttatttgtatgattaagtgtattatatgtttagctatttcaataaattatatttaattactccaaataa |
29661580 |
T |
|
| Q |
170 |
gtttatttgtgtaaaattaagagaaataaaatactcaa |
207 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| |||| |
|
|
| T |
29661579 |
ttttatttgtgaaaagataagagaaataaaatattcaa |
29661542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 51 - 315
Target Start/End: Original strand, 2386673 - 2386934
Alignment:
| Q |
51 |
gtagctacgtgttagagaggggtagctttggctaccaaaaaatt-atctttttatttgtattattaaatgtaatttatgtttagctacccctt-taaaat |
148 |
Q |
| |
|
|||||||| | |||||||||| |||||||||| ||| |||||| || |||||||| |||||| ||| |||| ||| ||| |||||||||| |||||| |
|
|
| T |
2386673 |
gtagctaccttttagagaggg-tagctttggcgaccccaaaatttatatttttattagtattagtaagtgtattttgtgtctagctacccccaataaaat |
2386771 |
T |
|
| Q |
149 |
atatttagccacttcagataagtttatttgtgtaaaattaagagaaataaaatactcaaaaagattaccactttgtttaatagatttattttttcttatt |
248 |
Q |
| |
|
||||||||| || || ||||||||||||||| ||||| ||||||||||||||| || ||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
2386772 |
atatttagctaccccaaataagtttatttgtgcaaaatcaagagaaataaaatattc---aagattaccac-ttgtttaaaagatttattttgtcttatt |
2386867 |
T |
|
| Q |
249 |
ctgacatttttggtatttcaaacaactaaaaggagagcattgttagcaatgaaaattgtaaagataa |
315 |
Q |
| |
|
||||||||||| ||| | || ||||||||| || | | | ||||||||||||||||||||||||| |
|
|
| T |
2386868 |
ttgacatttttgatatcttaagcaactaaaaagataataatattagcaatgaaaattgtaaagataa |
2386934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 143 - 242
Target Start/End: Original strand, 31330972 - 31331069
Alignment:
| Q |
143 |
taaaatatatttagccacttcagataagtttatttgtgtaaaattaagagaaataaaatactcaaaaagattaccactttgtttaatagatttatttttt |
242 |
Q |
| |
|
||||||||||||||| | || | |||| |||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||| ||||||| ||||| |
|
|
| T |
31330972 |
taaaatatatttagctattttaaataattttatttgtgtaaaatcaagagaaataaaataatc-aaaagattaccac-ttgtttaaaagatttaattttt |
31331069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 123 - 209
Target Start/End: Original strand, 18940527 - 18940615
Alignment:
| Q |
123 |
tttatgtttagctacccctttaaaatatatttagccacttcaga--taagtttatttgtgtaaaattaagagaaataaaatactcaaaa |
209 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||| || || | |||||||||||||| ||| ||| |||||||||||||||||||| |
|
|
| T |
18940527 |
tttatgtttagctacccctataaaatatgtttagctacaccaaaaataagtttatttgtgcaaagttatgagaaataaaatactcaaaa |
18940615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 53654928 - 53654871
Alignment:
| Q |
98 |
tttttatttgtattattaaatgtaatttatgtttagctacccctttaaaatatattta |
155 |
Q |
| |
|
||||||||||||| | |||||||| ||||||||||||||| || ||||||||||||| |
|
|
| T |
53654928 |
tttttatttgtatgagtaaatgtattttatgtttagctactccaataaaatatattta |
53654871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 31904663 - 31904743
Alignment:
| Q |
99 |
ttttatttgtattattaaatgtaatttatgtttagctacccctttaaaatatatttagccacttcagataagtttatttgt |
179 |
Q |
| |
|
||||||||| || | ||| | |||||||| |||||||||||| ||| ||||||||||| | ||| |||||||||||||| |
|
|
| T |
31904663 |
ttttatttgaataaataagtataatttatatttagctaccccaataatatatatttagctatctcaaataagtttatttgt |
31904743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 63 - 320
Target Start/End: Original strand, 7309533 - 7309790
Alignment:
| Q |
63 |
tagagaggggtagctttggctaccaaaaaattatctttttatttgtattattaaatgtaatttatgtttagctacccctttaaaatatatttagccactt |
162 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| ||||||||||||||| || || | ||||||||| ||||||| | |||||| |||||| || |
|
|
| T |
7309533 |
tagagaggggtagctttggctaccccaaaaatatatttttatttgtattaaaaagtggattttatgtttcactaccccaatcaaatatgtttagctaccc |
7309632 |
T |
|
| Q |
163 |
cagataagtttatttgtgtaaaattaagagaaataaaatactcaaaaagattaccactttgtttaatagatttattttttcttattctgacatttttg-- |
260 |
Q |
| |
|
|| |||| ||||||||| ||| | |||||||||||||||||| ||||||||| ||| |||||||| |||||||||| ||||||| ||||||||||| |
|
|
| T |
7309633 |
caaataaatttatttgtacaaagtcaagagaaataaaatactc-aaaagattatcac-ttgtttaaaagatttatttggtcttattttgacatttttgaa |
7309730 |
T |
|
| Q |
261 |
gtatttcaaacaactaaaaggagagcattgttagcaatgaaaattgtaaagataaaacta |
320 |
Q |
| |
|
||| | || ||||||||| |||| ||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
7309731 |
atatcttaagcaactaaaaagagaatattattaacaatgaaaatcgtaaagataaaacta |
7309790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 166 - 320
Target Start/End: Complemental strand, 7403044 - 7402892
Alignment:
| Q |
166 |
ataagtttatttgtgtaaaattaagagaaataaaatactcaaaaagattaccactttgtttaatagatttattttttcttattctgacatttttggtatt |
265 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| | |||| ||||||||||| |||||||||||||||||| ||||||| | ||||||||| ||| |
|
|
| T |
7403044 |
ataagtttatttgtgcgaaattaagagaaataaaatatttaaaa-gattaccactt-gtttaatagatttattttgtcttattttaacatttttgatatc |
7402947 |
T |
|
| Q |
266 |
tcaaacaactaaaaggagagcattgttagcaatgaaaattgtaaagataaaacta |
320 |
Q |
| |
|
| || ||| ||||| || | || | ||||||||||||||||| || |||||||| |
|
|
| T |
7402946 |
ttaaccaattaaaaagaaaacacttttagcaatgaaaattgtgaaagtaaaacta |
7402892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 63 - 202
Target Start/End: Complemental strand, 15514634 - 15514494
Alignment:
| Q |
63 |
tagagaggggtagctttggctacca-aaaaattatctttttatttgtattattaaatgtaatttatgtttagctacccctttaaaatatatttagccact |
161 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| |||||||||||||| ||| |||| ||| ||||| |||| ||| |||||||||| || || |
|
|
| T |
15514634 |
tagagaggggtagctttggcaaccccaaaaattataattttatttgtattagtaagtgtattttgtgtttggctatcccaataaaatatatcgggctacc |
15514535 |
T |
|
| Q |
162 |
tcagataagtttatttgtgtaaaattaagagaaataaaata |
202 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15514534 |
tcaaataagtttatttgtgcaaaattaagagaaataaaata |
15514494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 109 - 258
Target Start/End: Complemental strand, 32569385 - 32569239
Alignment:
| Q |
109 |
attattaaatgtaatttatgtttagctacccctttaaaatatatttagccacttcagataagtttatttgtgtaaaattaagagaaataaaatactcaaa |
208 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| |||||||| |||||| |||||| |||| |||||||| | ||| || ||||||||||||| || | |
|
|
| T |
32569385 |
attaataaatgtattttatgtttagctaccccaataaaatatgtttagctacttca-ataaatttatttgcgcaaagtttagagaaataaaatgtgcata |
32569287 |
T |
|
| Q |
209 |
aagattaccactttgtttaatagatttattttttcttattctgacatttt |
258 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
32569286 |
aa-attacca-tttgtttaatagatttattttatcttattttgacatttt |
32569239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 44 - 221
Target Start/End: Complemental strand, 30518144 - 30517966
Alignment:
| Q |
44 |
caagggtgtagctacgtgttagagaggggtagctttggctaccaaaaaattatctttt---tatttgtattattaaatgtaatttatgtttagctacccc |
140 |
Q |
| |
|
|||||| ||||| | || ||||||||||||||||||||||||| |||||||||||||| ||||| ||||| | | || | |||||||||| ||||||| |
|
|
| T |
30518144 |
caagggcgtagccatgtattagagaggggtagctttggctacccaaaaattatctttttattatttatattagttagtgcattttatgtttaactacccc |
30518045 |
T |
|
| Q |
141 |
tttaaaatatatttagccacttcagataagtttatttgtgtaaaattaagagaaataaaatactcaaaaagattaccactt |
221 |
Q |
| |
|
|| ||||| ||| | ||| | ||||||||||||||| ||| | || ||||||||||||||| ||||||||||||||| |
|
|
| T |
30518044 |
aatataatat-gttatctactctaaataagtttatttgtgcaaagtaaaaagaaataaaatactc-aaaagattaccactt |
30517966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 63 - 258
Target Start/End: Original strand, 24463874 - 24464068
Alignment:
| Q |
63 |
tagagaggggtagctttggctacca-aaaaattatctttttatttgtattattaaatgtaatttatgtttagctacccctttaaaatatatttagccact |
161 |
Q |
| |
|
||||||||||||||||| |||||| ||||| ||| |||||||||||||| ||| |||| ||||| |||||||| ||| |||||||||||| ||| |
|
|
| T |
24463874 |
tagagaggggtagctttagctaccccaaaaaatatacttttatttgtattaataagtgtactttatatttagctatcccaacaaaatatatttaaatact |
24463973 |
T |
|
| Q |
162 |
tcaga-taagtttatttgtgtaaaattaagagaaataaaatactcaaaaagattaccactttgtttaatagatttattttttcttattctgacatttt |
258 |
Q |
| |
|
|||| || |||| |||||||||| |||||||||||||||||||| ||||||||| || ||||||||| ||||||||||| | ||||| |||| |||| |
|
|
| T |
24463974 |
-cagaatatgtttgtttgtgtaaagttaagagaaataaaatactc-aaaagattatca-tttgtttaagagatttattttgttttattttgacgtttt |
24464068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 98 - 209
Target Start/End: Complemental strand, 8415649 - 8415538
Alignment:
| Q |
98 |
tttttatttgtattattaaatgtaatttatgtttagctacccctttaaaatatatttagccacttcagataagtttatttgtgtaaaattaagagaaata |
197 |
Q |
| |
|
|||||||||| |||| |||||||| |||||||||| ||| ||| ||||||||||||||| || | ||||||||||||||| ||| |||||||||||| |
|
|
| T |
8415649 |
tttttatttgaattagtaaatgtactttatgtttatctatcccaataaaatatatttagctaccctaaataagtttatttgtgcaaagttaagagaaata |
8415550 |
T |
|
| Q |
198 |
aaatactcaaaa |
209 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8415549 |
aaatactcaaaa |
8415538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 64 - 209
Target Start/End: Original strand, 1690909 - 1691054
Alignment:
| Q |
64 |
agagaggggtagctttggctacca-aaaaattatctttttatttgtattattaaatgtaatttatgtttagctacccctttaaaatatatttagccactt |
162 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||| || |||| ||| ||||||||| |||| ||||||||||||| | || | |
|
|
| T |
1690909 |
agagaggggtagctttggctacatcaaaaattatatttttatttgtattagtag-tgtattttgtgtttagctgccccaataaaatatatttatctacct |
1691007 |
T |
|
| Q |
163 |
cagataagtttatttgtgtaaaattaagagaaataaaatactcaaaa |
209 |
Q |
| |
|
|| |||||||| ||| || ||| ||||||||||||||||||| |||| |
|
|
| T |
1691008 |
caaataagtttctttatgcaaagttaagagaaataaaatactaaaaa |
1691054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 63 - 319
Target Start/End: Complemental strand, 19302 - 19046
Alignment:
| Q |
63 |
tagagaggggtagctttggcta-ccaaaaaattatc--tttttatttgtattattaaatgtaatttatgtttagctacccctttaaaatatatttagcca |
159 |
Q |
| |
|
|||||||| ||||||||||||| || ||||||||| ||||||||||||||| ||| |||| |||||||||| || ||| ||||||||||||| | | |
|
|
| T |
19302 |
tagagaggagtagctttggctatcctaaaaattattattttttatttgtattagtaagtgtattttatgtttattta-cccaataaaatatatttaacta |
19204 |
T |
|
| Q |
160 |
cttc-agataagtttatttgtgtaaaattaagagaaataaaatactcaaaaagattaccactttgtttaatagatttattttttcttattctgacatttt |
258 |
Q |
| |
|
|| | | |||||||||||| || || ||| |||||||||| ||||| ||||||||||||| |||||||| ||||||||||| |||||| ||||||| | |
|
|
| T |
19203 |
ctccaaaataagtttatttatgcaaggttatgagaaataaactactc-aaaagattaccac-ttgtttaa-agatttattttgtcttatgttgacattct |
19107 |
T |
|
| Q |
259 |
tggtatttcaaacaactaaaaggagagcattgttagcaatgaaaattgtaaagataaaact |
319 |
Q |
| |
|
| ||| || ||| ||||| |||| ||| ||| |||||||||||||| |||||||||| |
|
|
| T |
19106 |
cgatatcataagcaattaaaaagagaatattattaacaatgaaaattgtatagataaaact |
19046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 143 - 242
Target Start/End: Original strand, 886 - 983
Alignment:
| Q |
143 |
taaaatatatttagccacttcagataagtttatttgtgtaaaattaagagaaataaaatactcaaaaagattaccactttgtttaatagatttatttttt |
242 |
Q |
| |
|
||||||||||||||| | || | |||| |||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||| ||||||| ||||| |
|
|
| T |
886 |
taaaatatatttagctattttaaataattttatttgtgtaaaatcaagagaaataaaataatc-aaaagattaccac-ttgtttaaaagatttaattttt |
983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 43 - 201
Target Start/End: Complemental strand, 1996880 - 1996722
Alignment:
| Q |
43 |
ccaagggtgtagctacgtgttagagaggggtagctttggctaccaaaaaattatctttttatttgtattattaaatgtaatttatgtttagctacccctt |
142 |
Q |
| |
|
||||||| |||||||| | |||||||||||||||||||||||| |||||| ||||||| ||||| ||| |||| ||| |||||| |||| || |
|
|
| T |
1996880 |
ccaagggcgtagctaccttatagagaggggtagctttggctacctcaaaatttatattttattagtatttgtaagtgtattttgtgtttaactactccaa |
1996781 |
T |
|
| Q |
143 |
taaaatatatttagccacttcagataagtttatttgtgtaaaattaagagaaataaaat |
201 |
Q |
| |
|
||||||||||||||| | |||| |||||||||||||| ||| | ||| |||||||||| |
|
|
| T |
1996780 |
taaaatatatttagctatttcaaataagtttatttgtacaaattcaagggaaataaaat |
1996722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 40970787 - 40970837
Alignment:
| Q |
186 |
ttaagagaaataaaatactcaaaaagattaccactttgtttaatagatttatt |
238 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| || ||||||||||||||||||| |
|
|
| T |
40970787 |
ttaagaaaaataaaatactc-aaaagattatca-tttgtttaatagatttatt |
40970837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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