View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21263_low_17 (Length: 240)
Name: NF21263_low_17
Description: NF21263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21263_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 52346392 - 52346614
Alignment:
| Q |
1 |
ttatgtgagaatgataagaatgattttcagccgttagattaaaaataaattgttgagattaaaaatattgttatgttccattctcatttgatttgcaatt |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52346392 |
ttatgtaagaatgataagaatgattttcagccgttagattaaaaataaattgttgagattaaaaatattgttatgttccattctcatttgattcacaatt |
52346491 |
T |
|
| Q |
101 |
ctctctccagctcttgaccctttgctccgtccaagttatgttcgttcatcttcctcatctcatcacaaccttctatctccaccgacgaccaatctctctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| |||||||||||| |
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| T |
52346492 |
ctctctccagctcttgaccctttgctccgtccaagttatgttcgttcatcttcctcctctcatcacagccttctatctccaccaacggccaatctctctt |
52346591 |
T |
|
| Q |
201 |
ccccggcgatgatctctccctaa |
223 |
Q |
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||||| ||||||||||||||||| |
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| T |
52346592 |
ccccgacgatgatctctccctaa |
52346614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 52305836 - 52305900
Alignment:
| Q |
1 |
ttatgtgagaatgataagaatgattttcagccgttagattaaaaataaattgttgagattaaaaa |
65 |
Q |
| |
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|||| |||||||||| |||||||| ||| || ||||||||||||||||| |||||||||||||| |
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| T |
52305836 |
ttatatgagaatgatgagaatgatcatcaaccattagattaaaaataaatggttgagattaaaaa |
52305900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 21416569 - 21416612
Alignment:
| Q |
1 |
ttatgtgagaatgataagaatgattttcagccgttagattaaaa |
44 |
Q |
| |
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||||||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
21416569 |
ttatgtgagaatgataagaatgaatcccagccgttagattaaaa |
21416612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 35318388 - 35318331
Alignment:
| Q |
8 |
agaatgataagaatgattttcagccgttagattaaaaataaattgttgagattaaaaa |
65 |
Q |
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|||||| | |||||||| ||| || ||||||||||||||||| |||||||||||||| |
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| T |
35318388 |
agaatggtgagaatgatcatcaaccattagattaaaaataaatggttgagattaaaaa |
35318331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 24399469 - 24399407
Alignment:
| Q |
1 |
ttatgtgagaatgataagaatgattttcagccgttagattaaaaataaattgttgagattaaa |
63 |
Q |
| |
|
||||||||||||| ||||||||| || ||||| | |||||||||||||| |||||||||||| |
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|
| T |
24399469 |
ttatgtgagaatggtaagaatgaattacagccatcggattaaaaataaatggttgagattaaa |
24399407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 26774773 - 26774836
Alignment:
| Q |
1 |
ttatgtgagaatgataagaatgattttcagccgttagattaaaaataaattgttgagattaaaaa |
65 |
Q |
| |
|
||||||||||||||| |||||| ||||||| | || |||| ||||||||| | |||||||||||| |
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|
| T |
26774773 |
ttatgtgagaatgattagaatgtttttcagtctttggatt-aaaataaatggctgagattaaaaa |
26774836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 15295421 - 15295358
Alignment:
| Q |
1 |
ttatgtgagaatgataagaatgattttcagccgttagattaaaaataaattgttgagattaaaaa |
65 |
Q |
| |
|
||||||||||||||| |||||| |||| |||| || |||| |||||| || |||||||||||||| |
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|
| T |
15295421 |
ttatgtgagaatgatgagaatgttttttagcctttggatt-aaaatagatggttgagattaaaaa |
15295358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 35650847 - 35650891
Alignment:
| Q |
1 |
ttatgtgagaatgataagaatgattttcagccgttagattaaaaa |
45 |
Q |
| |
|
|||||||||||||||| |||||||||| | || |||||||||||| |
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| T |
35650847 |
ttatgtgagaatgataggaatgattttgaaccattagattaaaaa |
35650891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 55202082 - 55202145
Alignment:
| Q |
1 |
ttatgtgagaatgataagaatgattttcagccgttagattaaaaataaattgttgagattaaaaa |
65 |
Q |
| |
|
||||||||||||||| |||||| ||||||||| || |||| |||||| || ||| |||||||||| |
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| T |
55202082 |
ttatgtgagaatgatgagaatgtttttcagcctttggatt-aaaatagatggttcagattaaaaa |
55202145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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