View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21263_low_2 (Length: 919)

Name: NF21263_low_2
Description: NF21263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21263_low_2
NF21263_low_2
[»] chr8 (4 HSPs)
chr8 (13-908)||(4640917-4641813)
chr8 (694-732)||(5923871-5923909)
chr8 (694-738)||(36408242-36408286)
chr8 (694-727)||(11778096-11778129)
[»] chr5 (2 HSPs)
chr5 (17-295)||(3005096-3005372)
chr5 (384-590)||(3005566-3005755)
[»] chr7 (5 HSPs)
chr7 (16-295)||(7852913-7853190)
chr7 (551-682)||(7853567-7853697)
chr7 (618-682)||(44579733-44579797)
chr7 (384-422)||(7853453-7853491)
chr7 (695-732)||(35333336-35333373)
[»] chr3 (4 HSPs)
chr3 (16-249)||(5562931-5563161)
chr3 (384-597)||(5562630-5562832)
chr3 (695-733)||(49983608-49983646)
chr3 (694-733)||(30041363-30041402)
[»] chr6 (1 HSPs)
chr6 (694-733)||(6657930-6657969)
[»] chr4 (2 HSPs)
chr4 (17-102)||(54655095-54655179)
chr4 (694-733)||(31707406-31707445)
[»] chr2 (2 HSPs)
chr2 (694-733)||(31404997-31405036)
chr2 (694-733)||(34262761-34262800)
[»] chr1 (2 HSPs)
chr1 (694-733)||(17971419-17971458)
chr1 (694-733)||(28724021-28724060)


Alignment Details
Target: chr8 (Bit Score: 688; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 688; E-Value: 0
Query Start/End: Original strand, 13 - 908
Target Start/End: Complemental strand, 4641813 - 4640917
Alignment:
Q  13 acatgggacatgtatggaaatgcactaatgcattcattgaaaaagccctaaattacactgggaaattggaggggattggaaacactactgcaaacttcaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4641813 acatgggacatgtatggaaatgcactaatgcattcattgaaaaagccctaaattacactgggaaattggaggggattggaaacactactgcaaacttcaa 4641714  T
Q  113 cgactgtctcaaggggctgcaatcaaaattggtgctccagcattttggagaaattctgttttatttataacattgatatagtgtagtgttgtcttttgtt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||    
T  4641713 cgactgtctcaaggggctgcaatcaaaattggtgctccagcattttggagaaattctggtttatttataacattg--atagtgtagtgttgtcttttgtt 4641616  T
Q  213 atatagagtgtaccatgtcctatgtgtatgtcttgaactcagatttgtctttatgtattacatagatttgaatgaatgattcaaggatccatgnnnnnnn 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  4641615 atatagagtgtaccatgtcctatgtgtatgtcttgaactcagatttgtctttatgtattacatagatttgaatgaatgattcaaggatccatgttttttt 4641516  T
Q  313 aaaaataatattataaacacgatcatcatgttaataaagttggccttcctatttgtaccaaatnnnnnnnngttgtccttgctataaaataaatgagaat 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  4641515 aaaaataatattataaacacgatcatcatgttaataaagttggccttcctatttgtaccaaataaaaaaaagttgtccttgctataaaataaatgagaat 4641416  T
Q  413 attgatctttggccaattctcannnnnnnncttcgatatattacaaaatttgtggaaatgtctcgctataagtttgtataatttcacctgtttgaagtcg 512  Q
    ||||| ||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  4641415 attgacctttggccaattctcattttttttcttcgatatattacaaaatttgtggaaatgtctcgctataagtttgtataatttcacctgtttggagtca 4641316  T
Q  513 gtctcgacattctccataatgtttcaaccatattttatatagatctgcacatttgttttgaaggatcaattaaattaactaagttgtttgttttattnnn 612  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  4641315 gtctcgacattctccataatgtttcaaccatattttatatagatctgcacatttgttttgaaggatcaattaaattaactaagttgtttgttttattaaa 4641216  T
Q  613 nnnntgttgttggttttggatattttaaatagataatattgcatatatctacttttaaaaatgtagatgatctagtacctataatattaaaaagacaaac 712  Q
        |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4641215 aaaatgttgttggttttggaaattttaaatagataatattgcatatatctacttttaaaaatgtagatgatctagtacctataatattaaaaagacaaac 4641116  T
Q  713 attaaatgagggttagaaaagattgtgactttttcttatatattggaccaaa--nnnnnnnngaaaattttcttataaataggaccggagggctagtagt 810  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  4641115 attaaatgagggttagaaaagattgtgactttttcttatatattggaccaaattttttttttgaaaattttcttataaataggaccggagggctagtagt 4641016  T
Q  811 tttcttaataagtgtgatta-nnnnnnnnnnnnngcttgttatatggaacggagggagtaagttagaacttagaagtgatgtgtggtgtgatgatgatg 908  Q
    |||| |||||||||||||||              ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4641015 tttcgtaataagtgtgattatttttcttttttttgcttgttatatgggacggagggagtaagttagaacttagaagtgatgtgtggtgtgatgatgatg 4640917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 694 - 732
Target Start/End: Complemental strand, 5923909 - 5923871
Alignment:
Q  694 taatattaaaaagacaaacattaaatgagggttagaaaa 732  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5923909 taatattaaaaagacaaacattaaatgagggttagaaaa 5923871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 694 - 738
Target Start/End: Original strand, 36408242 - 36408286
Alignment:
Q  694 taatattaaaaagacaaacattaaatgagggttagaaaagattgt 738  Q
    ||||||||||||||||||||||||| |||||||| ||||| ||||    
T  36408242 taatattaaaaagacaaacattaaacgagggttaaaaaagtttgt 36408286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 694 - 727
Target Start/End: Complemental strand, 11778129 - 11778096
Alignment:
Q  694 taatattaaaaagacaaacattaaatgagggtta 727  Q
    |||||||||||||||||||||||||| |||||||    
T  11778129 taatattaaaaagacaaacattaaataagggtta 11778096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 3e-78; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 17 - 295
Target Start/End: Original strand, 3005096 - 3005372
Alignment:
Q  17 gggacatgtatggaaatgcactaatgcattcattgaaaaagccctaaattacactgggaaattggaggggattggaaacactactgcaaacttcaacgac 116  Q
    |||||||||||||||||||||| |||| ||  ||||||| ||| | |||| ||||  ||||||||||||||||||||||||||||||| ||||| ||| |    
T  3005096 gggacatgtatggaaatgcacttatgcgtttgttgaaaa-gccttgaattgcactatgaaattggaggggattggaaacactactgcacacttcgacggc 3005194  T
Q  117 tgtctcaaggggctgcaatcaaaattggtgctccagcattttggagaaattctgttttatttataacattgatatagtgtagtgttgtcttttgttatat 216  Q
    |||||| |||| |||||||||||||||||||||||| | || |||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||    
T  3005195 tgtctcgagggactgcaatcaaaattggtgctccagtagttgggagaaattctgttttatttataacattg--atagtgtagtgtggtcttttgttatat 3005292  T
Q  217 agagtgtaccatgtcctatgtgtatgtcttgaactcagatttgtctttatgtattac-atagatttgaatgaatgattca 295  Q
     |||||||||| |||||||||||||||||||||||  ||||||||||| |||||||| || ||||| |||||||| ||||    
T  3005293 ggagtgtaccaggtcctatgtgtatgtcttgaactgggatttgtctttttgtattactattgattttaatgaatggttca 3005372  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 384 - 590
Target Start/End: Original strand, 3005566 - 3005755
Alignment:
Q  384 gttgtccttgctataaaataaatgagaatattgatctttggccaattctcannnnnnnncttcgatatattacaaaatttgtggaaatgtctcgctataa 483  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||        ||  |||||||      ||||||| ||||||||| ||||||    
T  3005566 gttggccttgctataaaataaatgagaatattgttctttggccaattctcatttttttact--gatatat------atttgtgaaaatgtctcactataa 3005657  T
Q  484 gtttgtataatttcacctgtttgaagtcggtctcgacattctccataatgtttcaaccatattttatatagatctgcacatttgttttgaaggatcaatt 583  Q
    |||||||||||||||||||||||     || |    || |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  3005658 gtttgtataatttcacctgtttg-----gggc----cagtctccataatgtttcaaccataatttatatagatctgcacatttgttttaaaggatcaatt 3005748  T

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Target: chr7 (Bit Score: 142; Significance: 5e-74; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 7852913 - 7853190
Alignment:
Q  16 tgggacatgtatggaaatgcactaatgcattcattgaaaaagccctaaattacactgggaaattggaggggattggaaacactactgcaaacttcaacga 115  Q
    |||||||| ||||||||||||||||||||||| ||||||| ||||| |||| ||||  |||||||||  || ||||||||||||||||||||||| |||     
T  7852913 tgggacatatatggaaatgcactaatgcattcgttgaaaa-gccctgaattgcactatgaaattggaaagggttggaaacactactgcaaacttcgacgg 7853011  T
Q  116 ctgtctcaaggggctgcaatcaaaattggtgctccagcattttggagaaattctgttttatttataacattgatatagtgtagtgttgtcttttgttata 215  Q
    ||| ||| |||| |||||||||||| |||||||||| || || | ||||||| |||||||||||||||||||  |||||||||||| |||||||||||||    
T  7853012 ctgactcgagggactgcaatcaaaactggtgctccatcagttggaagaaattttgttttatttataacattg--atagtgtagtgtggtcttttgttata 7853109  T
Q  216 tagagtgtaccatgtcctatgtgtatgtcttgaactcagatttgtctttatgtattac-atagatttgaatgaatgattca 295  Q
    | ||||||| || ||||||||||||||||||| |||  |||||||||||||||||||| || |||||||||||||||||||    
T  7853110 tggagtgtagcaagtcctatgtgtatgtcttggactgggatttgtctttatgtattactattgatttgaatgaatgattca 7853190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 551 - 682
Target Start/End: Original strand, 7853567 - 7853697
Alignment:
Q  551 atagatctgcacatttgttttgaaggatcaattaaattaactaagttgtttgttttattnnnnnnntgttgtt-ggttttggatattttaaatagataat 649  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||          |||||| ||||||  ||||| || |||||||||    
T  7853567 atagatctgcacatttgttttgaaggatcaattaaattaactaaattgttggtttta--aaaataaagttgttaggttttatatattatagatagataat 7853664  T
Q  650 attgcatatatctacttttaaaaatgtagatga 682  Q
    |||||||||| ||||||||||||||||| ||||    
T  7853665 attgcatatacctacttttaaaaatgtatatga 7853697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 618 - 682
Target Start/End: Original strand, 44579733 - 44579797
Alignment:
Q  618 gttgttggttttggatattttaaatagataatattgcatatatctacttttaaaaatgtagatga 682  Q
    ||||||||||||  | ||| || |||||||||||||||||||||||||||| |||||||| ||||    
T  44579733 gttgttggttttataaattatagatagataatattgcatatatctactttttaaaatgtatatga 44579797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 384 - 422
Target Start/End: Original strand, 7853453 - 7853491
Alignment:
Q  384 gttgtccttgctataaaataaatgagaatattgatcttt 422  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  7853453 gttggccttgctataaaataaatgagaatattgatcttt 7853491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 732
Target Start/End: Complemental strand, 35333373 - 35333336
Alignment:
Q  695 aatattaaaaagacaaacattaaatgagggttagaaaa 732  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  35333373 aatattaaaaagacaaacattaaatgagggttaaaaaa 35333336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 4e-53; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 5563161 - 5562931
Alignment:
Q  16 tgggacatgtatggaaatgcactaatgcattcattgaaaaagccctaaattacactgggaaattggaggggattggaaacactactgcaaacttcaacga 115  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||  |||||||||  || ||||||||||||||||| ||||| |||     
T  5563161 tgggacatatatggaaatgcactaatgcattcgttgaaaa-gccctaaattacactatgaaattggaaagggttggaaacactactgcacacttcgacgg 5563063  T
Q  116 ctgtctcaaggggctgcaatcaaaattggtgctccagcattttggagaaattctgttttatttataacattgatatagtgtagtgttgtcttttgttata 215  Q
    || |||| |||| ||||| |||||| | ||||||||  | || | ||||||| |||||||||||||||||||  |||||||||||| ||||||||| |||    
T  5563062 ctatctcgagggactgcattcaaaactagtgctccaatagttggaagaaattttgttttatttataacattg--atagtgtagtgtggtcttttgtaata 5562965  T
Q  216 tagagtgtaccatgtcctatgtgtatgtcttgaa 249  Q
    | ||||||| || |||||||||||||||||||||    
T  5562964 tggagtgtagcaggtcctatgtgtatgtcttgaa 5562931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 384 - 597
Target Start/End: Complemental strand, 5562832 - 5562630
Alignment:
Q  384 gttgtccttgctataaaataaatgagaatattgatctttggccaattctcannnnnnnncttcgatatattacaaaatttgtggaaatgtctcgctataa 483  Q
    |||| |||||||||||||||||| | |||||||||||||||||||||||||        || |||||||| |||||||||| |  | | |||||||||||    
T  5562832 gttggccttgctataaaataaattaaaatattgatctttggccaattctcattttttttct-cgatatatcacaaaatttgagttatt-tctcgctataa 5562735  T
Q  484 gtttgtataatttcacctgtttgaagtcggtctcgacattctccataatgtttcaaccatattttatatagatctgcacatttgttttgaaggatcaatt 583  Q
    |||||| ||||||||||| ||||     || || |    |||||||||||||| | ||||| ||||||||||||||||||||| ||||||||||||||||    
T  5562734 gtttgtttaatttcacctatttg-----gggctgg----tctccataatgttttagccataatttatatagatctgcacattttttttgaaggatcaatt 5562644  T
Q  584 aaattaactaagtt 597  Q
    ||||||||||||||    
T  5562643 aaattaactaagtt 5562630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 695 - 733
Target Start/End: Complemental strand, 49983646 - 49983608
Alignment:
Q  695 aatattaaaaagacaaacattaaatgagggttagaaaag 733  Q
    |||||||||||||||||||||||||||||||||||||||    
T  49983646 aatattaaaaagacaaacattaaatgagggttagaaaag 49983608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 694 - 733
Target Start/End: Original strand, 30041363 - 30041402
Alignment:
Q  694 taatattaaaaagacaaacattaaatgagggttagaaaag 733  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  30041363 taatattaaaaagacaaacattaattaagggttagaaaag 30041402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 694 - 733
Target Start/End: Complemental strand, 6657969 - 6657930
Alignment:
Q  694 taatattaaaaagacaaacattaaatgagggttagaaaag 733  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6657969 taatattaaaaagacaaacattaaatgagggttagaaaag 6657930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 54655095 - 54655179
Alignment:
Q  17 gggacatgtatggaaatgcactaatgcattcattgaaaaagccctaaattacactgggaaattggaggggattggaaacactactg 102  Q
    ||||| |||||||||||||||| |||| ||  ||||||| ||| | |||| ||||  |||||||||||||||||||||||||||||    
T  54655095 gggacctgtatggaaatgcacttatgcgtttgttgaaaa-gccttgaattgcactatgaaattggaggggattggaaacactactg 54655179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 694 - 733
Target Start/End: Original strand, 31707406 - 31707445
Alignment:
Q  694 taatattaaaaagacaaacattaaatgagggttagaaaag 733  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  31707406 taatattaaaaagacaaacattaaataaggggtagaaaag 31707445  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 694 - 733
Target Start/End: Complemental strand, 31405036 - 31404997
Alignment:
Q  694 taatattaaaaagacaaacattaaatgagggttagaaaag 733  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  31405036 taatattaaaaagacaaatattaaatgagggttagaaaag 31404997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 694 - 733
Target Start/End: Complemental strand, 34262800 - 34262761
Alignment:
Q  694 taatattaaaaagacaaacattaaatgagggttagaaaag 733  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  34262800 taatattaaaaagacaaacattaattgagggttagaaaag 34262761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 694 - 733
Target Start/End: Original strand, 17971419 - 17971458
Alignment:
Q  694 taatattaaaaagacaaacattaaatgagggttagaaaag 733  Q
    ||||||| ||||||| ||||||||||||||||||||||||    
T  17971419 taatattgaaaagaccaacattaaatgagggttagaaaag 17971458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 694 - 733
Target Start/End: Original strand, 28724021 - 28724060
Alignment:
Q  694 taatattaaaaagacaaacattaaatgagggttagaaaag 733  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  28724021 taatattaaaaagataaacattaattgagggttagaaaag 28724060  T

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